RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 KIF13BQ9NQT8 1826 aa20.18■□□□□ 0.82
CPSF4-201ENST00000292476 C10orf71Q711Q0 1435 aa20.18■□□□□ 0.82
CPSF4-201ENST00000292476 ATP2B3Q16720 1220 aa20.18■□□□□ 0.82
CPSF4-201ENST00000292476 HAUS7Q99871 368 aa20.18■□□□□ 0.82
CPSF4-201ENST00000292476 WWC3Q9ULE0 1092 aa20.18■□□□□ 0.82
CPSF4-201ENST00000292476 RFX7Q2KHR2 1363 aa20.17■□□□□ 0.82
CPSF4-201ENST00000292476 MAP4K4O95819 1239 aaPredicted RBP20.17■□□□□ 0.82
CPSF4-201ENST00000292476 SERPINB2P05120 415 aa20.17■□□□□ 0.82
CPSF4-201ENST00000292476 ANKRD18AQ8IVF6 992 aa20.17■□□□□ 0.82
CPSF4-201ENST00000292476 GOLGB1Q14789 3259 aaKnown RBP20.17■□□□□ 0.82
CPSF4-201ENST00000292476 AK9Q5TCS8 1911 aa20.17■□□□□ 0.82
CPSF4-201ENST00000292476 DCAF8L1A6NGE4 600 aa20.16■□□□□ 0.82
CPSF4-201ENST00000292476 BAG4O95429 457 aaKnown RBP20.16■□□□□ 0.82
CPSF4-201ENST00000292476 PUM3Q15397 648 aaKnown RBP20.16■□□□□ 0.82
CPSF4-201ENST00000292476 GZF1Q9H116 711 aaPredicted RBP20.16■□□□□ 0.82
CPSF4-201ENST00000292476 LRRFIP1Q32MZ4 808 aaKnown RBP20.16■□□□□ 0.82
CPSF4-201ENST00000292476 CNBD1Q8NA66 436 aa20.16■□□□□ 0.82
CPSF4-201ENST00000292476 LPIN2Q92539 896 aa20.16■□□□□ 0.82
CPSF4-201ENST00000292476 KLHL40Q2TBA0 621 aa20.15■□□□□ 0.82
CPSF4-201ENST00000292476 TTC39AQ5SRH9 613 aa20.15■□□□□ 0.82
CPSF4-201ENST00000292476 KIAA1211Q6ZU35 1233 aa20.15■□□□□ 0.82
CPSF4-201ENST00000292476 VGLL2Q8N8G2 317 aa20.15■□□□□ 0.82
CPSF4-201ENST00000292476 XAGE2Q96GT9 111 aa20.15■□□□□ 0.82
CPSF4-201ENST00000292476 FSD1Q9BTV5 496 aa20.15■□□□□ 0.82
CPSF4-201ENST00000292476 FOXD4L1Q9NU39 408 aa20.15■□□□□ 0.82
CPSF4-201ENST00000292476 NRXN2Q9P2S2 1712 aa20.15■□□□□ 0.82
CPSF4-201ENST00000292476 RIC1Q4ADV7 1423 aa20.15■□□□□ 0.82
CPSF4-201ENST00000292476 KIAA1551Q9HCM1 1747 aa20.14■□□□□ 0.81
CPSF4-201ENST00000292476 GPR162Q16538 588 aa20.14■□□□□ 0.81
CPSF4-201ENST00000292476 ZNF512BQ96KM6 892 aaPredicted RBP20.14■□□□□ 0.81
CPSF4-201ENST00000292476 GRPEL1Q9HAV7 217 aa20.14■□□□□ 0.81
CPSF4-201ENST00000292476 SEC31BQ9NQW1 1179 aa20.14■□□□□ 0.81
CPSF4-201ENST00000292476 BSDC1Q9NW68 430 aaPredicted RBP20.14■□□□□ 0.81
CPSF4-201ENST00000292476 RAD50Q92878 1312 aa20.14■□□□□ 0.81
CPSF4-201ENST00000292476 SGSM2O43147 1006 aa20.13■□□□□ 0.81
CPSF4-201ENST00000292476 IFIT1P09914 478 aaKnown RBP20.13■□□□□ 0.81
CPSF4-201ENST00000292476 SLC5A1P13866 664 aa20.13■□□□□ 0.81
CPSF4-201ENST00000292476 ST5P78524 1137 aa20.13■□□□□ 0.81
CPSF4-201ENST00000292476 CCDC24Q8N4L8 307 aa20.13■□□□□ 0.81
CPSF4-201ENST00000292476 UTRNP46939 3433 aa20.13■□□□□ 0.81
CPSF4-201ENST00000292476 A0A0G2JLW4 131 aa20.13■□□□□ 0.81
CPSF4-201ENST00000292476 ANO2Q9NQ90 1003 aa20.13■□□□□ 0.81
CPSF4-201ENST00000292476 DDX46Q7L014 1031 aaKnown RBP20.12■□□□□ 0.81
CPSF4-201ENST00000292476 UQCRFS1P1P0C7P4 283 aa20.11■□□□□ 0.81
CPSF4-201ENST00000292476 DPEP1P16444 411 aa20.11■□□□□ 0.81
CPSF4-201ENST00000292476 TGFB2P61812 414 aa20.11■□□□□ 0.81
CPSF4-201ENST00000292476 CUL4AQ13619 759 aa20.11■□□□□ 0.81
CPSF4-201ENST00000292476 CWC27Q6UX04 472 aaKnown RBP20.11■□□□□ 0.81
CPSF4-201ENST00000292476 INTS4Q96HW7 963 aaKnown RBP20.11■□□□□ 0.81
CPSF4-201ENST00000292476 DNAJC2Q99543 621 aaKnown RBP20.11■□□□□ 0.81
CPSF4-201ENST00000292476 RTN4Q9NQC3 1192 aaKnown RBP20.11■□□□□ 0.81
CPSF4-201ENST00000292476 PAG1Q9NWQ8 432 aa20.11■□□□□ 0.81
CPSF4-201ENST00000292476 YBX3P16989 372 aaKnown RBP eCLIP20.1■□□□□ 0.819e-7■□□□□ 10.2
CPSF4-201ENST00000292476 KBTBD3Q8NAB2 608 aa20.1■□□□□ 0.81
CPSF4-201ENST00000292476 SPEF2Q9C093 1822 aa20.1■□□□□ 0.81
CPSF4-201ENST00000292476 FGFR2P21802 821 aa20.1■□□□□ 0.81
CPSF4-201ENST00000292476 RPS8P62241 208 aaKnown RBP20.1■□□□□ 0.81
CPSF4-201ENST00000292476 PRR5LQ6MZQ0 368 aa20.1■□□□□ 0.81
CPSF4-201ENST00000292476 CHRNA5P30532 468 aa20.09■□□□□ 0.81
CPSF4-201ENST00000292476 ANKRD2Q9GZV1 360 aa20.09■□□□□ 0.81
CPSF4-201ENST00000292476 NEK4P51957 841 aa20.08■□□□□ 0.81
CPSF4-201ENST00000292476 CHRNDQ07001 517 aa20.08■□□□□ 0.81
CPSF4-201ENST00000292476 TTF1Q15361 905 aaPredicted RBP20.08■□□□□ 0.81
CPSF4-201ENST00000292476 SNRKQ9NRH2 765 aa20.08■□□□□ 0.81
CPSF4-201ENST00000292476 ANKRD31Q8N7Z5 1873 aa20.08■□□□□ 0.8
CPSF4-201ENST00000292476 ADORA1P30542 326 aa20.07■□□□□ 0.8
CPSF4-201ENST00000292476 UBE4AQ14139 1066 aa20.07■□□□□ 0.8
CPSF4-201ENST00000292476 GOLIM4O00461 696 aa20.07■□□□□ 0.8
CPSF4-201ENST00000292476 ZFYP08048 801 aaPredicted RBP20.07■□□□□ 0.8
CPSF4-201ENST00000292476 C3orf67Q6ZVT6 689 aa20.07■□□□□ 0.8
CPSF4-201ENST00000292476 TMX3Q96JJ7 454 aa20.07■□□□□ 0.8
CPSF4-201ENST00000292476 KCNA3P22001 575 aa20.06■□□□□ 0.8
CPSF4-201ENST00000292476 ARID4AP29374 1257 aaPredicted RBP20.06■□□□□ 0.8
CPSF4-201ENST00000292476 HSPA4P34932 840 aa20.06■□□□□ 0.8
CPSF4-201ENST00000292476 BRCA1P38398 1863 aaKnown RBP20.06■□□□□ 0.8
CPSF4-201ENST00000292476 DDX49Q9Y6V7 483 aaKnown RBP20.06■□□□□ 0.8
CPSF4-201ENST00000292476 FKBP4Q02790 459 aaKnown RBP eCLIP20.05■□□□□ 0.8
CPSF4-201ENST00000292476 NMIQ13287 307 aaPredicted RBP20.05■□□□□ 0.8
CPSF4-201ENST00000292476 CCDC102BQ68D86 513 aa20.05■□□□□ 0.8
CPSF4-201ENST00000292476 ZSCAN25Q6NSZ9 544 aa20.05■□□□□ 0.8
CPSF4-201ENST00000292476 HELBQ8NG08 1087 aaPredicted RBP20.05■□□□□ 0.8
CPSF4-201ENST00000292476 RPGRQ92834 1020 aaKnown RBP20.05■□□□□ 0.8
CPSF4-201ENST00000292476 MINPP1Q9UNW1 487 aa20.05■□□□□ 0.8
CPSF4-201ENST00000292476 BCS1LQ9Y276 419 aa20.05■□□□□ 0.8
CPSF4-201ENST00000292476 ZNF445P59923 1031 aa20.04■□□□□ 0.8
CPSF4-201ENST00000292476 GRAPQ13588 217 aa20.04■□□□□ 0.8
CPSF4-201ENST00000292476 ZGPATQ8N5A5 531 aaKnown RBP20.04■□□□□ 0.8
CPSF4-201ENST00000292476 GRAPLQ8TC17 118 aaPredicted RBP20.04■□□□□ 0.8
CPSF4-201ENST00000292476 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.04■□□□□ 0.8
CPSF4-201ENST00000292476 HELLSQ9NRZ9 838 aa20.04■□□□□ 0.8
CPSF4-201ENST00000292476 LMBRD1Q9NUN5 540 aa20.04■□□□□ 0.8
CPSF4-201ENST00000292476 TAF5LO75529 589 aa20.03■□□□□ 0.8
CPSF4-201ENST00000292476 CRY2Q49AN0 593 aa20.03■□□□□ 0.8
CPSF4-201ENST00000292476 C2CD5Q86YS7 1000 aa20.03■□□□□ 0.8
CPSF4-201ENST00000292476 CELF1Q92879 486 aaKnown RBP20.03■□□□□ 0.8
CPSF4-201ENST00000292476 RBM17Q96I25 401 aaKnown RBP20.03■□□□□ 0.8
CPSF4-201ENST00000292476 PANK2Q9BZ23 570 aa20.03■□□□□ 0.8
CPSF4-201ENST00000292476 LSG1Q9H089 658 aaKnown RBP20.03■□□□□ 0.8
CPSF4-201ENST00000292476 GNL3LQ9NVN8 582 aaKnown RBP20.03■□□□□ 0.8
CPSF4-201ENST00000292476 ARAP2Q8WZ64 1704 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms