RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 LRMPQ12912 555 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 SASS6Q6UVJ0 657 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 NSUN7Q8NE18 718 aaKnown RBP19.57■□□□□ 0.72
VPS54-201ENST00000272322 SCAND2PQ9GZW5 306 aaPredicted RBP19.57■□□□□ 0.72
VPS54-201ENST00000272322 LMO7Q8WWI1 1683 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 TNS3Q68CZ2 1445 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 AIFM3Q96NN9 605 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 MYL10Q9BUA6 226 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 ZBTB1Q9Y2K1 713 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 MRVI1Q9Y6F6 885 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 TUBGCP6Q96RT7 1819 aa19.57■□□□□ 0.72
VPS54-201ENST00000272322 NKX2-3Q8TAU0 364 aa19.56■□□□□ 0.72
VPS54-201ENST00000272322 PYCARDQ9ULZ3 195 aa19.56■□□□□ 0.72
VPS54-201ENST00000272322 ZMYM1Q5SVZ6 1142 aa19.56■□□□□ 0.72
VPS54-201ENST00000272322 SLC9C2Q5TAH2 1124 aa19.56■□□□□ 0.72
VPS54-201ENST00000272322 USPL1Q5W0Q7 1092 aa19.56■□□□□ 0.72
VPS54-201ENST00000272322 KLF18A0A0U1RQI7 1052 aa19.56■□□□□ 0.72
VPS54-201ENST00000272322 BIN1O00499 593 aa19.56■□□□□ 0.72
VPS54-201ENST00000272322 CPLX1O14810 134 aa19.55■□□□□ 0.72
VPS54-201ENST00000272322 CCAR1Q8IX12 1150 aaKnown RBP19.55■□□□□ 0.72
VPS54-201ENST00000272322 CBX8Q9HC52 389 aa19.55■□□□□ 0.72
VPS54-201ENST00000272322 ZNF165P49910 485 aa19.55■□□□□ 0.72
VPS54-201ENST00000272322 SF3A1Q15459 793 aaKnown RBP19.55■□□□□ 0.72
VPS54-201ENST00000272322 ATP2B3Q16720 1220 aa19.55■□□□□ 0.72
VPS54-201ENST00000272322 RRP12Q5JTH9 1297 aaKnown RBP19.55■□□□□ 0.72
VPS54-201ENST00000272322 A0A1B0GVL5 298 aa19.55■□□□□ 0.72
VPS54-201ENST00000272322 GOLGA8BA8MQT2 603 aa19.55■□□□□ 0.72
VPS54-201ENST00000272322 LETM1O95202 739 aaPredicted RBP19.55■□□□□ 0.72
VPS54-201ENST00000272322 PDIA3P30101 505 aaKnown RBP19.55■□□□□ 0.72
VPS54-201ENST00000272322 NOLC1Q14978 699 aaKnown RBP eCLIP19.55■□□□□ 0.72
VPS54-201ENST00000272322 ZNF500O60304 480 aaPredicted RBP19.54■□□□□ 0.72
VPS54-201ENST00000272322 RALYLQ86SE5 291 aaKnown RBP19.54■□□□□ 0.72
VPS54-201ENST00000272322 FUCA2Q9BTY2 467 aa19.54■□□□□ 0.72
VPS54-201ENST00000272322 ERVV-2B6SEH9 535 aa19.54■□□□□ 0.72
VPS54-201ENST00000272322 UBE2Q2LH0YL09 131 aa19.54■□□□□ 0.72
VPS54-201ENST00000272322 RESTQ13127 1097 aa19.54■□□□□ 0.72
VPS54-201ENST00000272322 CCDC186Q7Z3E2 898 aa19.54■□□□□ 0.72
VPS54-201ENST00000272322 C5P01031 1676 aa19.53■□□□□ 0.72
VPS54-201ENST00000272322 PRC1O43663 620 aa19.53■□□□□ 0.72
VPS54-201ENST00000272322 HS1BP3Q53T59 392 aa19.53■□□□□ 0.72
VPS54-201ENST00000272322 ATG3Q9NT62 314 aa19.53■□□□□ 0.72
VPS54-201ENST00000272322 GPAA1O43292 621 aa19.53■□□□□ 0.72
VPS54-201ENST00000272322 IRS4O14654 1257 aaPredicted RBP19.52■□□□□ 0.72
VPS54-201ENST00000272322 STARD3NLO95772 234 aa19.52■□□□□ 0.72
VPS54-201ENST00000272322 MICU3Q86XE3 530 aa19.52■□□□□ 0.72
VPS54-201ENST00000272322 MCAMP43121 646 aa19.52■□□□□ 0.72
VPS54-201ENST00000272322 PHKA1P46020 1223 aa19.52■□□□□ 0.72
VPS54-201ENST00000272322 SDF4Q9BRK5 362 aa19.52■□□□□ 0.72
VPS54-201ENST00000272322 SENP2Q9HC62 589 aa19.52■□□□□ 0.72
VPS54-201ENST00000272322 ATP2B1P20020 1258 aa19.52■□□□□ 0.71
VPS54-201ENST00000272322 MARCKSP29966 332 aaPredicted RBP19.52■□□□□ 0.71
VPS54-201ENST00000272322 ADD1P35611 737 aaKnown RBP19.52■□□□□ 0.71
VPS54-201ENST00000272322 IMMTQ16891 758 aaKnown RBP19.52■□□□□ 0.71
VPS54-201ENST00000272322 FAM200AQ8TCP9 573 aa19.52■□□□□ 0.71
VPS54-201ENST00000272322 ZKSCAN3Q9BRR0 538 aa19.52■□□□□ 0.71
VPS54-201ENST00000272322 FILIP1Q7Z7B0 1213 aa19.51■□□□□ 0.71
VPS54-201ENST00000272322 PHKBQ93100 1093 aa19.51■□□□□ 0.71
VPS54-201ENST00000272322 SLC4A9Q96Q91 983 aa19.51■□□□□ 0.71
VPS54-201ENST00000272322 GOLPH3LQ9H4A5 285 aa19.51■□□□□ 0.71
VPS54-201ENST00000272322 HELLSQ9NRZ9 838 aa19.51■□□□□ 0.71
VPS54-201ENST00000272322 ZNF213O14771 459 aa19.51■□□□□ 0.71
VPS54-201ENST00000272322 FSIP1Q8NA03 581 aa19.51■□□□□ 0.71
VPS54-201ENST00000272322 CAMTA1Q9Y6Y1 1673 aa19.51■□□□□ 0.71
VPS54-201ENST00000272322 ARID5BQ14865 1188 aa19.5■□□□□ 0.71
VPS54-201ENST00000272322 CMTR1Q8N1G2 835 aaKnown RBP19.5■□□□□ 0.71
VPS54-201ENST00000272322 PFKFB2O60825 505 aa19.5■□□□□ 0.71
VPS54-201ENST00000272322 CARD10Q9BWT7 1032 aa19.5■□□□□ 0.71
VPS54-201ENST00000272322 SEC31BQ9NQW1 1179 aa19.5■□□□□ 0.71
VPS54-201ENST00000272322 ORC3Q9UBD5 711 aaPredicted RBP19.5■□□□□ 0.71
VPS54-201ENST00000272322 WTIPA6NIX2 430 aaPredicted RBP19.5■□□□□ 0.71
VPS54-201ENST00000272322 NUTM2BA6NNL0 878 aaPredicted RBP19.5■□□□□ 0.71
VPS54-201ENST00000272322 NUTM2EB1AL46 878 aaPredicted RBP19.5■□□□□ 0.71
VPS54-201ENST00000272322 TSGA10IPQ3SY00 556 aa19.5■□□□□ 0.71
VPS54-201ENST00000272322 C11orf57Q6ZUT1 292 aaPredicted RBP19.5■□□□□ 0.71
VPS54-201ENST00000272322 NUTM2AQ8IVF1 878 aaPredicted RBP19.5■□□□□ 0.71
VPS54-201ENST00000272322 KCNF1Q9H3M0 494 aa19.5■□□□□ 0.71
VPS54-201ENST00000272322 CCDC24Q8N4L8 307 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 OVOS2A0A0G2JMS6 1433 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 B4E1Z4 1266 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 PTPN21Q16825 1174 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 UVSSAQ2YD98 709 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 BICDL1Q6ZP65 573 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 CCDC73Q6ZRK6 1079 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 TTLL11Q8NHH1 800 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 CFAP45Q9UL16 551 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 BECN2A8MW95 431 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 NFXL1Q6ZNB6 911 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 VSIG10Q8N0Z9 540 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 ZNF592Q92610 1267 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 ISCA1Q9BUE6 129 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 WWC3Q9ULE0 1092 aa19.49■□□□□ 0.71
VPS54-201ENST00000272322 PRKCSHP14314 528 aaPredicted RBP19.48■□□□□ 0.71
VPS54-201ENST00000272322 FDPSP14324 419 aaKnown RBP19.48■□□□□ 0.71
VPS54-201ENST00000272322 C8orf76Q96K31 380 aa19.48■□□□□ 0.71
VPS54-201ENST00000272322 DSCC1Q9BVC3 393 aa19.48■□□□□ 0.71
VPS54-201ENST00000272322 CLIC4Q9Y696 253 aa19.48■□□□□ 0.71
VPS54-201ENST00000272322 FOXP2O15409 715 aa19.48■□□□□ 0.71
VPS54-201ENST00000272322 TPM2P07951 284 aa19.48■□□□□ 0.71
VPS54-201ENST00000272322 EXOSC10Q01780 885 aaKnown RBP19.48■□□□□ 0.71
VPS54-201ENST00000272322 GNL2Q13823 731 aaKnown RBP19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms