RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 SLC10A5Q5PT55 438 aa18.29■□□□□ 0.52
SF3B4-201ENST00000271628 NOL8Q76FK4 1167 aaKnown RBP18.29■□□□□ 0.52
SF3B4-201ENST00000271628 ZSCAN31Q96LW9 406 aaPredicted RBP18.29■□□□□ 0.52
SF3B4-201ENST00000271628 BCL2L12Q9HB09 334 aa18.29■□□□□ 0.52
SF3B4-201ENST00000271628 ZAP70P43403 619 aa18.28■□□□□ 0.52
SF3B4-201ENST00000271628 ERFEQ4G0M1 354 aa18.28■□□□□ 0.52
SF3B4-201ENST00000271628 TBC1D9BQ66K14 1250 aa18.28■□□□□ 0.52
SF3B4-201ENST00000271628 ZSCAN25Q6NSZ9 544 aa18.28■□□□□ 0.52
SF3B4-201ENST00000271628 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.28■□□□□ 0.52
SF3B4-201ENST00000271628 ARID4AP29374 1257 aaPredicted RBP18.27■□□□□ 0.52
SF3B4-201ENST00000271628 ANKRD1Q15327 319 aa18.27■□□□□ 0.52
SF3B4-201ENST00000271628 CCDC102BQ68D86 513 aa18.27■□□□□ 0.52
SF3B4-201ENST00000271628 BLOC1S2Q6QNY1 142 aa18.27■□□□□ 0.52
SF3B4-201ENST00000271628 CCDC129Q6ZRS4 1044 aa18.27■□□□□ 0.52
SF3B4-201ENST00000271628 ALDH8A1Q9H2A2 487 aaPredicted RBP18.27■□□□□ 0.52
SF3B4-201ENST00000271628 GOLGA6L22H0YM25 854 aa18.27■□□□□ 0.51
SF3B4-201ENST00000271628 CHGBP05060 677 aa18.27■□□□□ 0.51
SF3B4-201ENST00000271628 MCAMP43121 646 aa18.27■□□□□ 0.51
SF3B4-201ENST00000271628 SCARF1Q14162 830 aa18.27■□□□□ 0.51
SF3B4-201ENST00000271628 FAM196AQ6ZSG2 479 aa18.27■□□□□ 0.51
SF3B4-201ENST00000271628 SH2B1Q9NRF2 756 aaPredicted RBP18.27■□□□□ 0.51
SF3B4-201ENST00000271628 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.27■□□□□ 0.51
SF3B4-201ENST00000271628 ARAP2Q8WZ64 1704 aa18.27■□□□□ 0.51
SF3B4-201ENST00000271628 HMGB2P26583 209 aaKnown RBP18.26■□□□□ 0.51
SF3B4-201ENST00000271628 TRAPPC3LQ5T215 181 aa18.26■□□□□ 0.51
SF3B4-201ENST00000271628 TPTE2Q6XPS3 522 aa18.26■□□□□ 0.51
SF3B4-201ENST00000271628 BICDL1Q6ZP65 573 aa18.26■□□□□ 0.51
SF3B4-201ENST00000271628 ARHGEF1Q92888 912 aaKnown RBP18.26■□□□□ 0.51
SF3B4-201ENST00000271628 AKAP11Q9UKA4 1901 aa18.26■□□□□ 0.51
SF3B4-201ENST00000271628 ANKRD18AQ8IVF6 992 aa18.26■□□□□ 0.51
SF3B4-201ENST00000271628 HELBQ8NG08 1087 aaPredicted RBP18.26■□□□□ 0.51
SF3B4-201ENST00000271628 C4BP0C0L5 1744 aa18.25■□□□□ 0.51
SF3B4-201ENST00000271628 MAST3O60307 1309 aa18.25■□□□□ 0.51
SF3B4-201ENST00000271628 CPA1P15085 419 aa18.25■□□□□ 0.51
SF3B4-201ENST00000271628 RFC4P35249 363 aa18.25■□□□□ 0.51
SF3B4-201ENST00000271628 APPBP2Q92624 585 aa18.25■□□□□ 0.51
SF3B4-201ENST00000271628 HSPD1P10809 573 aaKnown RBP18.24■□□□□ 0.51
SF3B4-201ENST00000271628 RPS6KB1P23443 525 aa18.24■□□□□ 0.51
SF3B4-201ENST00000271628 NBPF5PQ86XG9 351 aaPredicted RBP18.24■□□□□ 0.51
SF3B4-201ENST00000271628 NLRP3Q96P20 1036 aa18.24■□□□□ 0.51
SF3B4-201ENST00000271628 NEK1Q96PY6 1258 aa18.24■□□□□ 0.51
SF3B4-201ENST00000271628 SRP68Q9UHB9 627 aaKnown RBP18.24■□□□□ 0.51
SF3B4-201ENST00000271628 CYP21A2P08686 494 aa18.24■□□□□ 0.51
SF3B4-201ENST00000271628 HMGB1P09429 215 aaKnown RBP18.24■□□□□ 0.51
SF3B4-201ENST00000271628 ADRA2BP18089 450 aa18.24■□□□□ 0.51
SF3B4-201ENST00000271628 CHRNDQ07001 517 aa18.24■□□□□ 0.51
SF3B4-201ENST00000271628 WASHC4Q2M389 1173 aa18.24■□□□□ 0.51
SF3B4-201ENST00000271628 KRT27Q7Z3Y8 459 aa18.24■□□□□ 0.51
SF3B4-201ENST00000271628 OSBP2Q969R2 916 aa18.24■□□□□ 0.51
SF3B4-201ENST00000271628 BSDC1Q9NW68 430 aaPredicted RBP18.24■□□□□ 0.51
SF3B4-201ENST00000271628 MYH7P12883 1935 aa18.23■□□□□ 0.51
SF3B4-201ENST00000271628 PHKA1P46020 1223 aa18.23■□□□□ 0.51
SF3B4-201ENST00000271628 COL24A1Q17RW2 1714 aa18.23■□□□□ 0.51
SF3B4-201ENST00000271628 SLC27A3Q5K4L6 730 aa18.22■□□□□ 0.51
SF3B4-201ENST00000271628 PI16Q6UXB8 463 aa18.22■□□□□ 0.51
SF3B4-201ENST00000271628 CTNNA3Q9UI47 895 aa18.22■□□□□ 0.51
SF3B4-201ENST00000271628 BAG4O95429 457 aaKnown RBP18.22■□□□□ 0.51
SF3B4-201ENST00000271628 SLFNL1Q499Z3 407 aa18.22■□□□□ 0.51
SF3B4-201ENST00000271628 SMIM5Q71RC9 77 aa18.22■□□□□ 0.51
SF3B4-201ENST00000271628 GRPEL1Q9HAV7 217 aa18.22■□□□□ 0.51
SF3B4-201ENST00000271628 M0R2C6 588 aa18.21■□□□□ 0.51
SF3B4-201ENST00000271628 PKP1Q13835 747 aa18.21■□□□□ 0.51
SF3B4-201ENST00000271628 UBE3CQ15386 1083 aa18.21■□□□□ 0.51
SF3B4-201ENST00000271628 SPATA5Q8NB90 893 aa18.21■□□□□ 0.51
SF3B4-201ENST00000271628 ADD2P35612 726 aa18.21■□□□□ 0.51
SF3B4-201ENST00000271628 SLC9C2Q5TAH2 1124 aa18.21■□□□□ 0.51
SF3B4-201ENST00000271628 BRD1O95696 1058 aa18.2■□□□□ 0.5
SF3B4-201ENST00000271628 UBE4AQ14139 1066 aa18.2■□□□□ 0.5
SF3B4-201ENST00000271628 LRRC4BQ9NT99 713 aa18.2■□□□□ 0.5
SF3B4-201ENST00000271628 ZDHHC9Q9Y397 364 aa18.2■□□□□ 0.5
SF3B4-201ENST00000271628 SMC3Q9UQE7 1217 aa18.19■□□□□ 0.5
SF3B4-201ENST00000271628 TAF6LQ9Y6J9 622 aa18.19■□□□□ 0.5
SF3B4-201ENST00000271628 CASZ1Q86V15 1759 aa18.19■□□□□ 0.5
SF3B4-201ENST00000271628 C4AP0C0L4 1744 aa18.19■□□□□ 0.5
SF3B4-201ENST00000271628 PDIA4P13667 645 aaKnown RBP18.19■□□□□ 0.5
SF3B4-201ENST00000271628 C3orf67Q6ZVT6 689 aa18.19■□□□□ 0.5
SF3B4-201ENST00000271628 AMIGO3Q86WK7 504 aa18.19■□□□□ 0.5
SF3B4-201ENST00000271628 PUS7LQ9H0K6 701 aaKnown RBP18.19■□□□□ 0.5
SF3B4-201ENST00000271628 IDH1O75874 414 aaKnown RBP18.18■□□□□ 0.5
SF3B4-201ENST00000271628 PHF14O94880 888 aa18.18■□□□□ 0.5
SF3B4-201ENST00000271628 MAP3K12Q12852 859 aa18.18■□□□□ 0.5
SF3B4-201ENST00000271628 ME3Q16798 604 aa18.18■□□□□ 0.5
SF3B4-201ENST00000271628 ZNF772Q68DY9 489 aaPredicted RBP18.18■□□□□ 0.5
SF3B4-201ENST00000271628 LARP6Q9BRS8 491 aaKnown RBP18.18■□□□□ 0.5
SF3B4-201ENST00000271628 WDR33Q9C0J8 1336 aaKnown RBP18.18■□□□□ 0.5
SF3B4-201ENST00000271628 CARMIL3Q8ND23 1372 aa18.18■□□□□ 0.5
SF3B4-201ENST00000271628 NPHP1O15259 732 aa18.18■□□□□ 0.5
SF3B4-201ENST00000271628 RPS8P62241 208 aaKnown RBP18.18■□□□□ 0.5
SF3B4-201ENST00000271628 RASGRF1Q13972 1273 aa18.18■□□□□ 0.5
SF3B4-201ENST00000271628 IMMTQ16891 758 aaKnown RBP18.18■□□□□ 0.5
SF3B4-201ENST00000271628 BRWD3Q6RI45 1802 aa18.18■□□□□ 0.5
SF3B4-201ENST00000271628 PANK2Q9BZ23 570 aa18.18■□□□□ 0.5
SF3B4-201ENST00000271628 PIH1D3Q9NQM4 214 aaKnown RBP18.18■□□□□ 0.5
SF3B4-201ENST00000271628 GNL3LQ9NVN8 582 aaKnown RBP18.18■□□□□ 0.5
SF3B4-201ENST00000271628 TPCN1Q9ULQ1 816 aa18.18■□□□□ 0.5
SF3B4-201ENST00000271628 MINPP1Q9UNW1 487 aa18.18■□□□□ 0.5
SF3B4-201ENST00000271628 SNAP23O00161 211 aa18.17■□□□□ 0.5
SF3B4-201ENST00000271628 GPAA1O43292 621 aa18.17■□□□□ 0.5
SF3B4-201ENST00000271628 DHX32Q7L7V1 743 aaKnown RBP18.17■□□□□ 0.5
SF3B4-201ENST00000271628 LARGE1O95461 756 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms