RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ATL3Q6DD88 541 aa21.97■■□□□ 1.11
CPSF3-201ENST00000238112 CCAR1Q8IX12 1150 aaKnown RBP21.97■■□□□ 1.11
CPSF3-201ENST00000238112 ZNF594Q96JF6 807 aaPredicted RBP21.97■■□□□ 1.11
CPSF3-201ENST00000238112 TMEM94Q12767 1356 aa21.97■■□□□ 1.11
CPSF3-201ENST00000238112 CCDC73Q6ZRK6 1079 aa21.97■■□□□ 1.11
CPSF3-201ENST00000238112 GOLGA6L19H0YKK7 550 aa21.96■■□□□ 1.11
CPSF3-201ENST00000238112 CIAO1O76071 339 aa21.96■■□□□ 1.11
CPSF3-201ENST00000238112 ZNF274Q96GC6 653 aaPredicted RBP21.96■■□□□ 1.11
CPSF3-201ENST00000238112 NCOA5Q9HCD5 579 aaKnown RBP21.96■■□□□ 1.11
CPSF3-201ENST00000238112 PCDH11XQ9BZA7 1347 aa21.96■■□□□ 1.11
CPSF3-201ENST00000238112 PCDH11YQ9BZA8 1340 aa21.96■■□□□ 1.11
CPSF3-201ENST00000238112 A1BGP04217 495 aa21.96■■□□□ 1.11
CPSF3-201ENST00000238112 FTOQ9C0B1 505 aaKnown RBP eCLIP21.96■■□□□ 1.11
CPSF3-201ENST00000238112 ATG3Q9NT62 314 aa21.96■■□□□ 1.11
CPSF3-201ENST00000238112 PDIA3P30101 505 aaKnown RBP21.95■■□□□ 1.1
CPSF3-201ENST00000238112 LRRFIP1Q32MZ4 808 aaKnown RBP21.95■■□□□ 1.1
CPSF3-201ENST00000238112 TSC1Q92574 1164 aa21.95■■□□□ 1.1
CPSF3-201ENST00000238112 PARP4Q9UKK3 1724 aaKnown RBP21.95■■□□□ 1.1
CPSF3-201ENST00000238112 CPDO75976 1380 aa21.95■■□□□ 1.1
CPSF3-201ENST00000238112 SALL1Q9NSC2 1324 aa21.95■■□□□ 1.1
CPSF3-201ENST00000238112 A0A0G2JLW4 131 aa21.95■■□□□ 1.1
CPSF3-201ENST00000238112 STX1AQ16623 288 aa21.95■■□□□ 1.1
CPSF3-201ENST00000238112 CHST3Q7LGC8 479 aa21.95■■□□□ 1.1
CPSF3-201ENST00000238112 USP28Q96RU2 1077 aa21.95■■□□□ 1.1
CPSF3-201ENST00000238112 CEP126Q9P2H0 1117 aa21.95■■□□□ 1.1
CPSF3-201ENST00000238112 CLIP2Q9UDT6 1046 aa21.95■■□□□ 1.1
CPSF3-201ENST00000238112 LAMA4Q16363 1823 aa21.95■■□□□ 1.1
CPSF3-201ENST00000238112 DCCP43146 1447 aa21.94■■□□□ 1.1
CPSF3-201ENST00000238112 ZCRB1Q8TBF4 217 aaKnown RBP21.94■■□□□ 1.1
CPSF3-201ENST00000238112 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.94■■□□□ 1.1
CPSF3-201ENST00000238112 ARID3AQ99856 593 aa21.94■■□□□ 1.1
CPSF3-201ENST00000238112 NRBP1Q9UHY1 535 aa21.94■■□□□ 1.1
CPSF3-201ENST00000238112 ERVV-2B6SEH9 535 aa21.94■■□□□ 1.1
CPSF3-201ENST00000238112 M0R2C6 588 aa21.94■■□□□ 1.1
CPSF3-201ENST00000238112 KINO60870 393 aaKnown RBP21.94■■□□□ 1.1
CPSF3-201ENST00000238112 FKBP4Q02790 459 aaKnown RBP eCLIP21.94■■□□□ 1.1
CPSF3-201ENST00000238112 LRMPQ12912 555 aa21.93■■□□□ 1.1
CPSF3-201ENST00000238112 CCDC158Q5M9N0 1113 aa21.93■■□□□ 1.1
CPSF3-201ENST00000238112 GORABQ5T7V8 394 aa21.93■■□□□ 1.1
CPSF3-201ENST00000238112 ZSCAN25Q6NSZ9 544 aa21.93■■□□□ 1.1
CPSF3-201ENST00000238112 PUS3Q9BZE2 481 aaKnown RBP21.93■■□□□ 1.1
CPSF3-201ENST00000238112 GOLPH3LQ9H4A5 285 aa21.93■■□□□ 1.1
CPSF3-201ENST00000238112 SPATA31A3Q5VYP0 1347 aa21.93■■□□□ 1.1
CPSF3-201ENST00000238112 PPFIA3O75145 1194 aa21.92■■□□□ 1.1
CPSF3-201ENST00000238112 ME1P48163 572 aa21.92■■□□□ 1.1
CPSF3-201ENST00000238112 GUCY1B3Q02153 619 aa21.92■■□□□ 1.1
CPSF3-201ENST00000238112 CTNNA3Q9UI47 895 aa21.92■■□□□ 1.1
CPSF3-201ENST00000238112 CARMIL3Q8ND23 1372 aa21.92■■□□□ 1.1
CPSF3-201ENST00000238112 CDC25BP30305 580 aa21.92■■□□□ 1.1
CPSF3-201ENST00000238112 CCDC57Q2TAC2 916 aa21.92■■□□□ 1.1
CPSF3-201ENST00000238112 TTC39AQ5SRH9 613 aa21.92■■□□□ 1.1
CPSF3-201ENST00000238112 TTLL5Q6EMB2 1281 aa21.92■■□□□ 1.1
CPSF3-201ENST00000238112 CADPS2Q86UW7 1296 aa21.92■■□□□ 1.1
CPSF3-201ENST00000238112 TJP1Q07157 1748 aa21.92■■□□□ 1.1
CPSF3-201ENST00000238112 NUP188Q5SRE5 1749 aa21.92■■□□□ 1.1
CPSF3-201ENST00000238112 FAM160A1Q05DH4 1040 aa21.91■■□□□ 1.1
CPSF3-201ENST00000238112 IQCB1Q15051 598 aa21.91■■□□□ 1.1
CPSF3-201ENST00000238112 C11orf57Q6ZUT1 292 aaPredicted RBP21.91■■□□□ 1.1
CPSF3-201ENST00000238112 ZNF710Q8N1W2 664 aa21.91■■□□□ 1.1
CPSF3-201ENST00000238112 OSBP2Q969R2 916 aa21.91■■□□□ 1.1
CPSF3-201ENST00000238112 RIOK3O14730 519 aaKnown RBP21.91■■□□□ 1.1
CPSF3-201ENST00000238112 SNW1Q13573 536 aaKnown RBP21.91■■□□□ 1.1
CPSF3-201ENST00000238112 WASHC4Q2M389 1173 aa21.91■■□□□ 1.1
CPSF3-201ENST00000238112 TOM1L2Q6ZVM7 507 aa21.91■■□□□ 1.1
CPSF3-201ENST00000238112 ZMYND15Q9H091 742 aa21.91■■□□□ 1.1
CPSF3-201ENST00000238112 SPEF2Q9C093 1822 aa21.91■■□□□ 1.1
CPSF3-201ENST00000238112 IMMTQ16891 758 aaKnown RBP21.9■■□□□ 1.1
CPSF3-201ENST00000238112 SARM1Q6SZW1 724 aa21.9■■□□□ 1.1
CPSF3-201ENST00000238112 FSIP1Q8NA03 581 aa21.9■■□□□ 1.1
CPSF3-201ENST00000238112 AKAP2Q9Y2D5 859 aa21.9■■□□□ 1.1
CPSF3-201ENST00000238112 BECN2A8MW95 431 aa21.9■■□□□ 1.1
CPSF3-201ENST00000238112 ZFYP08048 801 aaPredicted RBP21.9■■□□□ 1.1
CPSF3-201ENST00000238112 FBXL16Q8N461 479 aa21.9■■□□□ 1.1
CPSF3-201ENST00000238112 BCL2L12Q9HB09 334 aa21.89■■□□□ 1.1
CPSF3-201ENST00000238112 ANO10Q9NW15 660 aa21.89■■□□□ 1.1
CPSF3-201ENST00000238112 MYH15Q9Y2K3 1946 aa21.89■■□□□ 1.09
CPSF3-201ENST00000238112 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.89■■□□□ 1.09
CPSF3-201ENST00000238112 FAM177BA6PVY3 158 aa21.89■■□□□ 1.09
CPSF3-201ENST00000238112 ILDR1Q86SU0 546 aaPredicted RBP21.89■■□□□ 1.09
CPSF3-201ENST00000238112 ENGASEQ8NFI3 743 aa21.89■■□□□ 1.09
CPSF3-201ENST00000238112 CCDC94Q9BW85 323 aaPredicted RBP21.89■■□□□ 1.09
CPSF3-201ENST00000238112 WDR17Q8IZU2 1322 aa21.88■■□□□ 1.09
CPSF3-201ENST00000238112 KCPQ6ZWJ8 1503 aa21.88■■□□□ 1.09
CPSF3-201ENST00000238112 EVCP57679 992 aa21.88■■□□□ 1.09
CPSF3-201ENST00000238112 HAND2P61296 217 aa21.88■■□□□ 1.09
CPSF3-201ENST00000238112 XAGE2Q96GT9 111 aa21.88■■□□□ 1.09
CPSF3-201ENST00000238112 MRFAP1L1Q96HT8 127 aa21.88■■□□□ 1.09
CPSF3-201ENST00000238112 PRDM11Q9NQV5 511 aa21.88■■□□□ 1.09
CPSF3-201ENST00000238112 FBXO3Q9UK99 471 aa21.88■■□□□ 1.09
CPSF3-201ENST00000238112 DHX16O60231 1041 aaKnown RBP21.87■■□□□ 1.09
CPSF3-201ENST00000238112 FDPSP14324 419 aaKnown RBP21.87■■□□□ 1.09
CPSF3-201ENST00000238112 ADORA1P30542 326 aa21.87■■□□□ 1.09
CPSF3-201ENST00000238112 TAF7LQ5H9L4 462 aa21.87■■□□□ 1.09
CPSF3-201ENST00000238112 CACTINQ8WUQ7 758 aaKnown RBP21.87■■□□□ 1.09
CPSF3-201ENST00000238112 MRPS27Q92552 414 aaKnown RBP21.87■■□□□ 1.09
CPSF3-201ENST00000238112 C16orf45Q96MC5 204 aaPredicted RBP21.87■■□□□ 1.09
CPSF3-201ENST00000238112 CCDC144BQ3MJ40 725 aa21.86■■□□□ 1.09
CPSF3-201ENST00000238112 CCDC144CPQ8IYA2 1237 aa21.86■■□□□ 1.09
CPSF3-201ENST00000238112 ISCA1Q9BUE6 129 aa21.86■■□□□ 1.09
CPSF3-201ENST00000238112 RTEL1Q9NZ71 1219 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms