RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 PKD1P98161 4303 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.67□□□□□ -0.38
VPS53-218ENST00000575207 PRORSD1PA6NEY8 169 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 CD300LBA8K4G0 201 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 ZSCAN12O43309 604 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 LYPD3O95274 346 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 ANP32DO95626 131 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 ARG1P05089 322 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 TSPAN19P0C672 248 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 FSTP19883 344 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 NME5P56597 212 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 OR12D2P58182 307 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 ZNF626Q68DY1 528 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 ZNF770Q6IQ21 691 aaPredicted RBP12.67□□□□□ -0.38
VPS53-218ENST00000575207 MRPL21Q7Z2W9 205 aaKnown RBP12.67□□□□□ -0.38
VPS53-218ENST00000575207 Q8N1Y9 231 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 CHPT1Q8WUD6 406 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 ST6GALNAC6Q969X2 333 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 CDRT15Q96T59 188 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 EVA1AQ9H8M9 152 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 SLC7A7Q9UM01 511 aa12.67□□□□□ -0.38
VPS53-218ENST00000575207 hCG_1809904A0A1W2PP81 198 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 A0A1W2PPE2 198 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 A0A1W2PR64 198 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 A0A1W2PRV1 198 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 CPSF4LA6NMK7 179 aaKnown RBP12.66□□□□□ -0.38
VPS53-218ENST00000575207 M0R3H8 397 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 ACAA1P09110 424 aaPredicted RBP12.66□□□□□ -0.38
VPS53-218ENST00000575207 ALDOCP09972 364 aaKnown RBP12.66□□□□□ -0.38
VPS53-218ENST00000575207 RPL27P61353 136 aaKnown RBP12.66□□□□□ -0.38
VPS53-218ENST00000575207 GNG11P61952 73 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 UFM1P61960 85 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 SPIBQ01892 262 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 SLC34A1Q06495 639 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 LAPTM4AQ15012 233 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 RSPO1Q2MKA7 263 aaPredicted RBP12.66□□□□□ -0.38
VPS53-218ENST00000575207 RNLSQ5VYX0 342 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 OTPQ5XKR4 325 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 WDR82Q6UXN9 313 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 LYPD6Q86Y78 171 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 ANGPTL6Q8NI99 470 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 MPP4Q96JB8 637 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 COQ7Q99807 217 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 SLC25A33Q9BSK2 321 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 C19orf12Q9NSK7 152 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 SNTG1Q9NSN8 517 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 ADA2Q9NZK5 511 aa12.66□□□□□ -0.38
VPS53-218ENST00000575207 A0A1W2PPH5 198 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 CCRL2O00421 344 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 COPEO14579 308 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 OR7A10O76100 309 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 OR2F2O95006 317 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 TFF1P04155 84 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 ABHD2P08910 425 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 ZCCHC18P0CG32 403 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 BMP2P12643 396 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 ALDH3A1P30838 453 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 NAA10P41227 235 aaPredicted RBP12.65□□□□□ -0.38
VPS53-218ENST00000575207 RGNQ15493 299 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 SRSF7Q16629 238 aaKnown RBP eCLIP12.65□□□□□ -0.38
VPS53-218ENST00000575207 GTDC1Q4AE62 458 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 ENTPD8Q5MY95 495 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 ZNF782Q6ZMW2 699 aaPredicted RBP12.65□□□□□ -0.38
VPS53-218ENST00000575207 CBLL1Q75N03 491 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 DHDDSQ86SQ9 333 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 OR11H6Q8NGC7 330 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 BCAS4Q8TDM0 211 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 RBM14Q96PK6 669 aaKnown RBP12.65□□□□□ -0.38
VPS53-218ENST00000575207 RAB3IPQ96QF0 476 aaPredicted RBP12.65□□□□□ -0.38
VPS53-218ENST00000575207 NABP2Q9BQ15 211 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 HDHD2Q9H0R4 259 aa12.65□□□□□ -0.38
VPS53-218ENST00000575207 BHLHE40O14503 412 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 MT-ND1P03886 318 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 CTLA4P16410 223 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 IL12AP29459 219 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 CDX1P47902 265 aaPredicted RBP12.64□□□□□ -0.39
VPS53-218ENST00000575207 ALG10Q5BKT4 473 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 C9orf152Q5JTZ5 239 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 WDR86Q86TI4 376 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 NFKBIDQ8NI38 313 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 FMO2Q99518 471 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 PITX2Q99697 317 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 ISYNA1Q9NPH2 558 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 USE1Q9NZ43 259 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 VSX1Q9NZR4 365 aaPredicted RBP12.64□□□□□ -0.39
VPS53-218ENST00000575207 HILPDAQ9Y5L2 63 aa12.64□□□□□ -0.39
VPS53-218ENST00000575207 TRAPPC13A5PLN9 417 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 A6NIZ1 184 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 H7C1C5 153 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 IGHV1-8P0DP01 117 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 GMFBP60983 142 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 RAP1BP61224 184 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 LSM6P62312 80 aaKnown RBP12.63□□□□□ -0.39
VPS53-218ENST00000575207 LCN6P62502 163 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 RAP1AP62834 184 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 CSNK2BP67870 215 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 MXRA7P84157 204 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 KRTAP27-1Q3LI81 207 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 LGALS9CQ6DKI2 356 aa12.63□□□□□ -0.39
VPS53-218ENST00000575207 REEP3Q6NUK4 255 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms