RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 CSTBP04080 98 aaKnown RBP9.54□□□□□ -0.88
CCDC40-207ENST00000572253 IFNA4P05014 189 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 PI3P19957 117 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 CAV2P51636 162 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 RAB5BP61020 215 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 PEA15Q15121 130 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 GFOD2Q3B7J2 385 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 CHRFAM7AQ494W8 412 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 ZNF283Q8N7M2 679 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 ZNF441Q8N8Z8 693 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 OR51T1Q8NGJ9 327 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 OR4A4PQ8NGN8 299 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 OR2I1PQ8NGU4 316 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 NUDT22Q9BRQ3 303 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 NKX2-4Q9H2Z4 354 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 TAF9BQ9HBM6 251 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 GPR84Q9NQS5 396 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 EHFQ9NZC4 300 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 FIGNL2A6NMB9 653 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 IGLV3-19P01714 112 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 APOC1P02654 83 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 GLULP15104 373 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 DEFB133Q30KQ1 61 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 C9orf50Q5SZB4 431 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 PTCRAQ6ISU1 281 aaPredicted RBP9.54□□□□□ -0.88
CCDC40-207ENST00000572253 TMPPEQ6ZT21 453 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 TMEM200AQ86VY9 491 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 ADAMTS17Q8TE56 1095 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 EMG1Q92979 244 aaKnown RBP9.54□□□□□ -0.88
CCDC40-207ENST00000572253 OCSTAMPQ9BR26 566 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 OR5AC2Q9NZP5 309 aa9.54□□□□□ -0.88
CCDC40-207ENST00000572253 PQLC2LA1A4F0 135 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 CEACAM18A8MTB9 384 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 ZNF354AO60765 605 aaPredicted RBP9.53□□□□□ -0.88
CCDC40-207ENST00000572253 ZNF217O75362 1048 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 HOXB5P09067 269 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 LYL1P12980 280 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 GUCA1AP43080 201 aaPredicted RBP9.53□□□□□ -0.88
CCDC40-207ENST00000572253 OR3A4PP47883 348 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 RNF4P78317 190 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 GABREP78334 506 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 S100A12P80511 92 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 DCDP81605 110 aaKnown RBP9.53□□□□□ -0.88
CCDC40-207ENST00000572253 SRSF3P84103 164 aaKnown RBP9.53□□□□□ -0.88
CCDC40-207ENST00000572253 RAB32Q13637 225 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 ZNF529Q6P280 563 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 DOK3Q7L591 496 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 FOXRED2Q8IWF2 684 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 TMEM104Q8NE00 496 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 NUBPLQ8TB37 319 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 TMEM230Q96A57 120 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 ARHGAP5-AS1Q96IT6 56 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 RAB33BQ9H082 229 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 SLC26A1Q9H2B4 701 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 ANAPC10Q9UM13 185 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 A0A1B0GX78 115 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 C2orf72A6NCS6 295 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 MSGN1A6NI15 193 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 LIPT2A6NK58 231 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 RNASEK-C17orf49H0YIS7 233 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 IFNA21P01568 189 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 FAM157CP0CG43 387 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 BCKDHBP21953 392 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 NME2P22392 152 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 FOXF1Q12946 379 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 OR1L3Q8NH93 324 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 ROBO4Q8WZ75 1007 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 WNT2BQ93097 391 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 SMCO4Q9NRQ5 59 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 KLRF1Q9NZS2 232 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 RCC2Q9P258 522 aaKnown RBP9.53□□□□□ -0.88
CCDC40-207ENST00000572253 FAM96BQ9Y3D0 163 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 LRP3O75074 770 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 F12P00748 615 aaPredicted RBP9.53□□□□□ -0.88
CCDC40-207ENST00000572253 HEXAP06865 529 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 CD38P28907 300 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 SNU13P55769 128 aaKnown RBP9.53□□□□□ -0.88
CCDC40-207ENST00000572253 C14orf28Q4W4Y0 310 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 PLXDC1Q8IUK5 500 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 GLYATL2Q8WU03 294 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 C1orf123Q9NWV4 160 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 PPP4R1LQ9P1A2 415 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 CTSFQ9UBX1 484 aa9.53□□□□□ -0.88
CCDC40-207ENST00000572253 SLC2A1P11166 492 aa9.52□□□□□ -0.88
CCDC40-207ENST00000572253 ZNF121P58317 390 aaPredicted RBP9.52□□□□□ -0.88
CCDC40-207ENST00000572253 SURF2Q15527 256 aaPredicted RBP9.52□□□□□ -0.88
CCDC40-207ENST00000572253 ANKRD55Q3KP44 614 aa9.52□□□□□ -0.88
CCDC40-207ENST00000572253 PLAC9Q5JTB6 97 aa9.52□□□□□ -0.88
CCDC40-207ENST00000572253 GALNTL5Q7Z4T8 443 aa9.52□□□□□ -0.88
CCDC40-207ENST00000572253 OR5AS1Q8N127 324 aa9.52□□□□□ -0.88
CCDC40-207ENST00000572253 NOXO1Q8NFA2 376 aa9.52□□□□□ -0.88
CCDC40-207ENST00000572253 OR8B12Q8NGG6 310 aa9.52□□□□□ -0.88
CCDC40-207ENST00000572253 SMIM8Q96KF7 97 aa9.52□□□□□ -0.88
CCDC40-207ENST00000572253 GHRLQ9UBU3 117 aa9.52□□□□□ -0.88
CCDC40-207ENST00000572253 POMT1Q9Y6A1 747 aa9.52□□□□□ -0.88
CCDC40-207ENST00000572253 TLX3O43711 291 aaPredicted RBP9.52□□□□□ -0.89
CCDC40-207ENST00000572253 CRYBA1P05813 215 aa9.52□□□□□ -0.89
CCDC40-207ENST00000572253 SFTA3P0C7M3 94 aa9.52□□□□□ -0.89
CCDC40-207ENST00000572253 MUC1P15941 1255 aaPredicted RBP9.52□□□□□ -0.89
CCDC40-207ENST00000572253 ECI1P42126 302 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms