RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 NUBP1P53384 320 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 ANKRD55Q3KP44 614 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 OR1N1Q8NGS0 311 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 OR10C1Q96KK4 312 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 ST6GALNAC5Q9BVH7 336 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 VN1R1Q9GZP7 353 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 METTL8Q9H825 291 aaKnown RBP11.71□□□□□ -0.53
CLN3-210ENST00000563874 UQCC1Q9NVA1 299 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 MRPS28Q9Y2Q9 187 aaKnown RBP11.71□□□□□ -0.53
CLN3-210ENST00000563874 PHF3Q92576 2039 aaKnown RBP11.71□□□□□ -0.54
CLN3-210ENST00000563874 A6NIZ1 184 aa11.71□□□□□ -0.54
CLN3-210ENST00000563874 H2AFB1P0C5Y9 115 aa11.71□□□□□ -0.54
CLN3-210ENST00000563874 RAB13P51153 203 aa11.71□□□□□ -0.54
CLN3-210ENST00000563874 DAP3P51398 398 aaKnown RBP11.71□□□□□ -0.54
CLN3-210ENST00000563874 S100A10P60903 97 aa11.71□□□□□ -0.54
CLN3-210ENST00000563874 RAP1BP61224 184 aa11.71□□□□□ -0.54
CLN3-210ENST00000563874 RAP1AP62834 184 aa11.71□□□□□ -0.54
CLN3-210ENST00000563874 PCK2Q16822 640 aa11.71□□□□□ -0.54
CLN3-210ENST00000563874 DTWD2Q8NBA8 298 aa11.71□□□□□ -0.54
CLN3-210ENST00000563874 OR1L3Q8NH93 324 aa11.71□□□□□ -0.54
CLN3-210ENST00000563874 NMES1Q9C002 83 aa11.71□□□□□ -0.54
CLN3-210ENST00000563874 TMEM100Q9NV29 134 aa11.71□□□□□ -0.54
CLN3-210ENST00000563874 CTSFQ9UBX1 484 aa11.71□□□□□ -0.54
CLN3-210ENST00000563874 CABIN1Q9Y6J0 2220 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 A0A1W2PPC4 97 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 TMEM14DPA8MWL7 114 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 ST8SIA5O15466 376 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 HOXB5P09067 269 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 KCNJ3P48549 501 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 FOXK1P85037 733 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 MFAP5Q13361 173 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 RAB32Q13637 225 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 MST1LQ2TV78 715 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 CARD17Q5XLA6 110 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 FBXO46Q6PJ61 603 aaPredicted RBP11.7□□□□□ -0.54
CLN3-210ENST00000563874 PGAP1Q75T13 922 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 NPRL2Q8WTW4 380 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 ARHGAP5-AS1Q96IT6 56 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 CDCA3Q99618 268 aaPredicted RBP11.7□□□□□ -0.54
CLN3-210ENST00000563874 KLF2Q9Y5W3 355 aaPredicted RBP11.7□□□□□ -0.54
CLN3-210ENST00000563874 CRTAPO75718 401 aaPredicted RBP11.7□□□□□ -0.54
CLN3-210ENST00000563874 HCKP08631 526 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 SPP1P10451 314 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 RCC1P18754 421 aaPredicted RBP11.7□□□□□ -0.54
CLN3-210ENST00000563874 FBLP22087 321 aaKnown RBP11.7□□□□□ -0.54
CLN3-210ENST00000563874 CX3CR1P49238 355 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 TMEM50BP56557 158 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 SUPT4H1P63272 117 aaKnown RBP11.7□□□□□ -0.54
CLN3-210ENST00000563874 ARFRP1Q13795 201 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 SHHQ15465 462 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 DEGS2Q6QHC5 323 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 DRAM2Q6UX65 266 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 GALNTL5Q7Z4T8 443 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 GPER1Q99527 375 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 ZNF319Q9P2F9 582 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 GPR132Q9UNW8 380 aa11.7□□□□□ -0.54
CLN3-210ENST00000563874 ADAM10O14672 748 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 TO15178 435 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 SERPINA5P05154 406 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 MYF5P13349 255 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 SELLP14151 372 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 MUC1P15941 1255 aaPredicted RBP11.69□□□□□ -0.54
CLN3-210ENST00000563874 GLRA1P23415 457 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 ID4P47928 161 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 RELQ04864 619 aaPredicted RBP11.69□□□□□ -0.54
CLN3-210ENST00000563874 GPR27Q9NS67 375 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 FLVCR1Q9Y5Y0 555 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 TRBV6-7A0A0A0MS04 114 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 METTL12A8MUP2 240 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 CRYBA1P05813 215 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 SFTPBP07988 381 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 HIST1H1DP16402 221 aaKnown RBP11.69□□□□□ -0.54
CLN3-210ENST00000563874 CCR5P51681 352 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 OR1D5P58170 312 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 TAS2R31P59538 309 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 CYCSP99999 105 aaKnown RBP11.69□□□□□ -0.54
CLN3-210ENST00000563874 FOXF1Q12946 379 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 PDZK1IP1Q13113 114 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 RBM39Q14498 530 aaKnown RBP11.69□□□□□ -0.54
CLN3-210ENST00000563874 ZNF528Q3MIS6 628 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 DHRS7BQ6IAN0 325 aaPredicted RBP11.69□□□□□ -0.54
CLN3-210ENST00000563874 NUBPLQ8TB37 319 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 RHOFQ9HBH0 211 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 ACKR4Q9NPB9 350 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 GPR84Q9NQS5 396 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 MMP26Q9NRE1 261 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 LPAR3Q9UBY5 353 aa11.69□□□□□ -0.54
CLN3-210ENST00000563874 CARHSP1Q9Y2V2 147 aaKnown RBP11.69□□□□□ -0.54
CLN3-210ENST00000563874 H3BMH7 237 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 CDC14BO60729 498 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 LRP3O75074 770 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 SNAPINO95295 136 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 SFT2D2O95562 160 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 KNG1P01042 644 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 GIMD1P0DJR0 217 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 FOLR1P15328 257 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 AMY2BP19961 511 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 NME2P22392 152 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 PJVKQ0ZLH3 352 aa11.68□□□□□ -0.54
CLN3-210ENST00000563874 RPL7L1Q6DKI1 246 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 491.7 ms