RNA–Protein interactions for RNA: ENST00000561976.5

VPS9D1-202, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,791 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-202ENST00000561976 FOXK1P85037 733 aa12.39□□□□□ -0.43
VPS9D1-202ENST00000561976 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.39□□□□□ -0.43
VPS9D1-202ENST00000561976 KIAA0895LQ68EN5 471 aa12.39□□□□□ -0.43
VPS9D1-202ENST00000561976 C5orf46Q6UWT4 87 aa12.39□□□□□ -0.43
VPS9D1-202ENST00000561976 ABHD12BQ7Z5M8 362 aaPredicted RBP12.39□□□□□ -0.43
VPS9D1-202ENST00000561976 NAA40Q86UY6 237 aa12.39□□□□□ -0.43
VPS9D1-202ENST00000561976 SKA3Q8IX90 412 aa12.39□□□□□ -0.43
VPS9D1-202ENST00000561976 KCNG3Q8TAE7 436 aa12.39□□□□□ -0.43
VPS9D1-202ENST00000561976 NECAB3Q96P71 396 aaPredicted RBP12.39□□□□□ -0.43
VPS9D1-202ENST00000561976 NUDT16L1Q9BRJ7 211 aaKnown RBP12.39□□□□□ -0.43
VPS9D1-202ENST00000561976 SLC5A7Q9GZV3 580 aa12.39□□□□□ -0.43
VPS9D1-202ENST00000561976 CPAMD8Q8IZJ3 1885 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 CDC14BO60729 498 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 FBXO24O75426 580 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 HEXAP06865 529 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 GIMD1P0DJR0 217 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 RCC1P18754 421 aaPredicted RBP12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 GLRA1P23415 457 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 FPR2P25090 351 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 RAB5BP61020 215 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 SUPT4H1P63272 117 aaKnown RBP12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 S100A12P80511 92 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 GALNTL5Q7Z4T8 443 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 ARHGAP5-AS1Q96IT6 56 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 FAM71F1Q96KD3 344 aaPredicted RBP12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 SMIM8Q96KF7 97 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 SULT4A1Q9BR01 284 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 TMEM106CQ9BVX2 250 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 EDARQ9UNE0 448 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 VDAC3Q9Y277 283 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 TLCD2A6NGC4 264 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 H3BML4 177 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 TO15178 435 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 RAD51DO75771 328 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 DRD1P21728 446 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 EFNA3P52797 238 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 GPR85P60893 370 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 DMRTC1Q5HYR2 192 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 RTBDNQ9BSG5 229 aaPredicted RBP12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 SLC26A1Q9H2B4 701 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 FANCFQ9NPI8 374 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 SLC22A11Q9NSA0 550 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 FBLN5Q9UBX5 448 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 PCDHGA1Q9Y5H4 931 aa12.38□□□□□ -0.43
VPS9D1-202ENST00000561976 EIF3GO75821 320 aaKnown RBP eCLIP12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 KNG1P01042 644 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 LYL1P12980 280 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 PTGFRP43088 359 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 TMEM50BP56557 158 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 SNRPEP62304 92 aaKnown RBP12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 CSNK2A1P68400 391 aaPredicted RBP12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 SMAD2Q15796 467 aaKnown RBP12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 IGSF11Q5DX21 431 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 C16orf47Q6ZP98 133 aaPredicted RBP12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 CSNK2A3Q8NEV1 391 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 OR10S1Q8NGN2 331 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 OR13G1Q8NGZ3 307 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 LMX1AQ8TE12 382 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 MAFIPQ8WZ33 124 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 SOX7Q9BT81 388 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 CHST11Q9NPF2 352 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 ARID1AO14497 2285 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 HOXB1P14653 301 aaPredicted RBP12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 ARL4DP49703 201 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 ZP4Q12836 540 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 COL19A1Q14993 1142 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 DMBX1Q8NFW5 382 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 OR56B1Q8NGI3 324 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 OR1N1Q8NGS0 311 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 OR2AJ1Q8NGZ0 328 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 MFSD8Q8NHS3 518 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 C14orf79Q96F83 325 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 SMCO4Q9NRQ5 59 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 EHFQ9NZC4 300 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 DNAJB11Q9UBS4 358 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 SRPK3Q9UPE1 567 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 MEMO1Q9Y316 297 aa12.37□□□□□ -0.43
VPS9D1-202ENST00000561976 GLAP06280 429 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 ADH6P28332 368 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 AKR1C3P42330 323 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 FASLGP48023 281 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 DHPSP49366 369 aaPredicted RBP12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 C1orf189Q5VU69 101 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 Q7L0L9 218 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 POC1AQ8NBT0 407 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 URM1Q9BTM9 101 aaKnown RBP12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 THADAQ6YHU6 1953 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 COLCA2A8K830 154 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 FBLP22087 321 aaKnown RBP12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 ID4P47928 161 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 F2RL1P55085 397 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 SMCO1Q147U7 214 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 ZNF529Q6P280 563 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 OR5AS1Q8N127 324 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 THAP3Q8WTV1 239 aaPredicted RBP12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 AKR1E2Q96JD6 320 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 GPR84Q9NQS5 396 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 SUSD2Q9UGT4 822 aa12.36□□□□□ -0.43
VPS9D1-202ENST00000561976 SHISA8B8ZZ34 492 aa12.35□□□□□ -0.43
VPS9D1-202ENST00000561976 TAAR5O14804 337 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms