RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 RXFP4Q8TDU9 374 aa14.42□□□□□ -0.1
SHMT2-231ENST00000557433 C1orf147Q96MC9 270 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-231ENST00000557433 C5orf34Q96MH7 638 aa14.42□□□□□ -0.1
SHMT2-231ENST00000557433 USB1Q9BQ65 265 aaKnown RBP14.42□□□□□ -0.1
SHMT2-231ENST00000557433 RTBDNQ9BSG5 229 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-231ENST00000557433 NICN1Q9BSH3 213 aa14.42□□□□□ -0.1
SHMT2-231ENST00000557433 ADAT1Q9BUB4 502 aaKnown RBP14.42□□□□□ -0.1
SHMT2-231ENST00000557433 EGLN1Q9GZT9 426 aa14.42□□□□□ -0.1
SHMT2-231ENST00000557433 TAF9BQ9HBM6 251 aa14.42□□□□□ -0.1
SHMT2-231ENST00000557433 OR5AC2Q9NZP5 309 aa14.42□□□□□ -0.1
SHMT2-231ENST00000557433 A0A0A6YYD4 124 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 MSGN1A6NI15 193 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 C17orf51A8MQB3 221 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 ETV2O00321 342 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-231ENST00000557433 ADAM10O14672 748 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 JTBO76095 146 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 SPP1P10451 314 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 DVL1P1P54792 670 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-231ENST00000557433 GFERP55789 205 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 SUPT4H1P63272 117 aaKnown RBP14.41□□□□□ -0.1
SHMT2-231ENST00000557433 SLC9A3R2Q15599 337 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 RNF212Q495C1 297 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 FAM76BQ5HYJ3 339 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 FBXO46Q6PJ61 603 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-231ENST00000557433 BTNL8Q6UX41 500 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 SFT2D1Q8WV19 159 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 HRH4Q9H3N8 390 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 ZNF304Q9HCX3 659 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 SLC22A11Q9NSA0 550 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 KPTNQ9Y664 436 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 FREM3P0C091 2139 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 IGKV1D-43A0A0B4J1Z2 117 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 MEX3AA1L020 520 aaKnown RBP14.41□□□□□ -0.1
SHMT2-231ENST00000557433 LINC01565O15544 149 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 ADAP1O75689 374 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 S100A8P05109 93 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 FCGR3AP08637 254 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 GIMD1P0DJR0 217 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 NME1P15531 152 aaKnown RBP14.41□□□□□ -0.1
SHMT2-231ENST00000557433 IL11P20809 199 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 ALDH3B1P43353 468 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 ANKRD55Q3KP44 614 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 PTCRAQ6ISU1 281 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-231ENST00000557433 DOK3Q7L591 496 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 OR10S1Q8NGN2 331 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 SLC39A7Q92504 469 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 MRPL13Q9BYD1 178 aaKnown RBP14.41□□□□□ -0.1
SHMT2-231ENST00000557433 C1orf123Q9NWV4 160 aa14.41□□□□□ -0.1
SHMT2-231ENST00000557433 LIPT2A6NK58 231 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 VSTM2BA6NLU5 285 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 SOCS1O15524 211 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 KCNAB3O43448 404 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 MED6O75586 246 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 SFTA3P0C7M3 94 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 PPM1FP49593 454 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-231ENST00000557433 RAB32Q13637 225 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 ARFRP1Q13795 201 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 OPN5Q6U736 354 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 TMPPEQ6ZT21 453 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 PNLDC1Q8NA58 520 aaKnown RBP14.4□□□□□ -0.1
SHMT2-231ENST00000557433 PLPP5Q8NEB5 264 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 LYPD6BQ8NI32 183 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 OR51E1Q8TCB6 317 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 FOXQ1Q9C009 403 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 OR10A2Q9H208 303 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 SLC2A4RGQ9NR83 387 aa14.4□□□□□ -0.1
SHMT2-231ENST00000557433 C14orf166Q9Y224 244 aaKnown RBP14.4□□□□□ -0.1
SHMT2-231ENST00000557433 COLCA2A8K830 154 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 SERPINE3A8MV23 424 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 RPS2P15880 293 aaKnown RBP14.39□□□□□ -0.11
SHMT2-231ENST00000557433 ZNF84P51523 738 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 BIDP55957 195 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 TMEM50BP56557 158 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 SMCO1Q147U7 214 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 SWI5Q1ZZU3 235 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 AADACL3Q5VUY0 350 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 TMEM268Q5VZI3 342 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 TMEM104Q8NE00 496 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 OR2I1PQ8NGU4 316 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 OR13G1Q8NGZ3 307 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 SSC4DQ8WTU2 575 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-231ENST00000557433 TMEM106CQ9BVX2 250 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 CNTNAP3Q9BZ76 1288 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 TMEM231Q9H6L2 316 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 SERINC1Q9NRX5 453 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 MED29Q9NX70 200 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 LRP3O75074 770 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 FARS2O95363 451 aaKnown RBP14.39□□□□□ -0.11
SHMT2-231ENST00000557433 HCKP08631 526 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 SMIM6P0DI80 62 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 HKR1P10072 659 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 PRF1P14222 555 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 BCKDHBP21953 392 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 MSX1P28360 303 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 ARL4DP49703 201 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 FAM3AP98173 230 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 HYAL1Q12794 435 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 KCNMB1Q16558 191 aa14.39□□□□□ -0.11
SHMT2-231ENST00000557433 FAM109BQ6ICB4 259 aaPredicted RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms