RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PAX6P26367 422 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 PTCRAQ6ISU1 281 aaPredicted RBP12.62□□□□□ -0.39
USP48-213ENST00000529637 AKR7LQ8NHP1 331 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 NMES1Q9C002 83 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 RAB33BQ9H082 229 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 TAF9BQ9HBM6 251 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 LOC101059948A0A1B0GTJ6 334 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 A0A1W2PPE2 198 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 FRG2CA6NGY1 282 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 IFITM10A6NMD0 228 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 M0R036 132 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 FBLP22087 321 aaKnown RBP12.62□□□□□ -0.39
USP48-213ENST00000529637 SLC6A9P48067 706 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 NPY4RP50391 375 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 PYY3Q5JQD4 70 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 SLC18B1Q6NT16 456 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 Q6ZRG5 221 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 ZDHHC22Q8N966 263 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 DAZLQ92904 295 aaKnown RBP12.62□□□□□ -0.39
USP48-213ENST00000529637 OR8B4Q96RC9 309 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 TCEAL7Q9BRU2 100 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 LMAN1LQ9HAT1 526 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 GSKIPQ9P0R6 139 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 GDF2Q9UK05 429 aaPredicted RBP12.62□□□□□ -0.39
USP48-213ENST00000529637 CA14Q9ULX7 337 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 WIF1Q9Y5W5 379 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 TMED7-TICAM2A0A0A6YYA0 188 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 MPZL1O95297 269 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 AHSA1O95433 338 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 GSK3AP49840 483 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 STARD6P59095 220 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 EMC4Q5J8M3 183 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 OR2A2Q6IF42 318 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 TCTEX1D2Q8WW35 142 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 TMEM230Q96A57 120 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 SAT2Q96F10 170 aaPredicted RBP12.62□□□□□ -0.39
USP48-213ENST00000529637 CCNL2Q96S94 520 aaPredicted RBP12.62□□□□□ -0.39
USP48-213ENST00000529637 CENPMQ9NSP4 180 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 CKLFQ9UBR5 152 aa12.62□□□□□ -0.39
USP48-213ENST00000529637 LRP4O75096 1905 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 DDAH2O95865 285 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 CD2P06729 351 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 CTLA4P16410 223 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 HTR5AP47898 357 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 CSNK1EP49674 416 aaKnown RBP12.61□□□□□ -0.39
USP48-213ENST00000529637 COL19A1Q14993 1142 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 SMRP1Q8NCR6 262 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 SEMA6DQ8NFY4 1073 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 TMEM41AQ96HV5 264 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 ZNF587Q96SQ5 575 aaPredicted RBP12.61□□□□□ -0.39
USP48-213ENST00000529637 OCSTAMPQ9BR26 566 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 ATXN7L1Q9ULK2 861 aaPredicted RBP12.61□□□□□ -0.39
USP48-213ENST00000529637 A0A1B0GV90 55 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 PRSS37A4D1T9 235 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 LILRA5A6NI73 299 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 AP4M1O00189 453 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 WRBO00258 174 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 GPR37O15354 613 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 IGFBP3P17936 291 aaPredicted RBP12.61□□□□□ -0.39
USP48-213ENST00000529637 GABRA4P48169 554 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 RPL27P61353 136 aaKnown RBP12.61□□□□□ -0.39
USP48-213ENST00000529637 UNC119Q13432 240 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 TOMM20Q15388 145 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 ANKRD55Q3KP44 614 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 CLEC9AQ6UXN8 241 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 LANCL3Q6ZV70 420 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 RNF144BQ7Z419 303 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 C9orf40Q8IXQ3 194 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 ZNF248Q8NDW4 579 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 ZNF721Q8TF20 911 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 MARS2Q96GW9 593 aaKnown RBP12.61□□□□□ -0.39
USP48-213ENST00000529637 SMIM3Q9BZL3 60 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 C5orf66Q9H5L9 145 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 MMACHCQ9Y4U1 282 aa12.61□□□□□ -0.39
USP48-213ENST00000529637 IGHV1OR15-9A0A0B4J2B8 117 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 TXNDC12O95881 172 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 RIDAP52758 137 aaKnown RBP12.6□□□□□ -0.39
USP48-213ENST00000529637 DVL1P1P54792 670 aaPredicted RBP12.6□□□□□ -0.39
USP48-213ENST00000529637 S100A10P60903 97 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 PRSS54Q6PEW0 395 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 CLEC18BQ6UXF7 455 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 LINC00346Q8IVM7 164 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 DMRTC2Q8IXT2 367 aaPredicted RBP12.6□□□□□ -0.39
USP48-213ENST00000529637 GPR119Q8TDV5 335 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 ASB17Q8WXJ9 295 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 ADIPOR1Q96A54 375 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 COA3Q9Y2R0 106 aaPredicted RBP12.6□□□□□ -0.39
USP48-213ENST00000529637 MED19A0JLT2 244 aaPredicted RBP12.6□□□□□ -0.39
USP48-213ENST00000529637 BGLAPP02818 100 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 IFNA6P05013 189 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 RAB6AP20340 208 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 DNASE1L1P49184 302 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 CX3CR1P49238 355 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 C1orf140Q5VVS0 124 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 KCTD18Q6PI47 426 aaPredicted RBP12.6□□□□□ -0.39
USP48-213ENST00000529637 ZNF679Q8IYX0 411 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 OR1L3Q8NH93 324 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 CNTD2Q9H8S5 307 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 SPACA1Q9HBV2 294 aa12.6□□□□□ -0.39
USP48-213ENST00000529637 MRPL22Q9NWU5 206 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms