RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 TNK1Q13470 666 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 SSX1Q16384 188 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 MOGQ16653 247 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 TMEM255AQ5JRV8 349 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 ZNF787Q6DD87 383 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 MUC15Q8N387 334 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 PLPP7Q8NBV4 271 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 CCDC54Q8NEL0 328 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 SEMA6DQ8NFY4 1073 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 OR56B2PQ8NGI1 322 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 OR14K1Q8NGZ2 314 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 GPR148Q8TDV2 347 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 RGP1Q92546 391 aaPredicted RBP10.48□□□□□ -0.73
SDC1-206ENST00000482879 TMED9Q9BVK6 235 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 TAAR3PQ9P1P4 343 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 MYEF2Q9P2K5 600 aaKnown RBP10.48□□□□□ -0.73
SDC1-206ENST00000482879 SCOCQ9UIL1 159 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 V9GYS6 101 aa10.48□□□□□ -0.73
SDC1-206ENST00000482879 HRNRQ86YZ3 2850 aaPredicted RBP10.48□□□□□ -0.73
SDC1-206ENST00000482879 IQCF6A8MYZ5 107 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 B9A039 149 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 CCRL2O00421 344 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 LMX1BO60663 402 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 CD53P19397 219 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 ACKR3P25106 362 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 MAGEB1P43366 347 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 RPS25P62851 125 aaKnown RBP10.47□□□□□ -0.73
SDC1-206ENST00000482879 RIPPLY1Q0D2K3 151 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 OR8B8Q15620 311 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 EFNB3Q15768 340 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 MST1LQ2TV78 715 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 YIF1BQ5BJH7 314 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 AGAP6Q5VW22 663 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 Q6ZSR3 168 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 MS4A15Q8N5U1 240 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 ZNF611Q8N823 705 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 BHLHE23Q8NDY6 225 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 CSNK2A3Q8NEV1 391 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 OR51A4Q8NGJ6 313 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 OR13C3Q8NGS6 347 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 OR13C5Q8NGS8 318 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 TSEN15Q8WW01 171 aaKnown RBP10.47□□□□□ -0.73
SDC1-206ENST00000482879 ITFG2Q969R8 447 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 TMEM203Q969S6 136 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 PLEKHF2Q9H8W4 249 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 FAIMQ9NVQ4 179 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 GPR160Q9UJ42 338 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 DHDHQ9UQ10 334 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 PIGLQ9Y2B2 252 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 CENPEQ02224 2701 aa10.47□□□□□ -0.73
SDC1-206ENST00000482879 USF3Q68DE3 2245 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 TRBV5-5A0A0J9YX44 114 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 A6NIN4 97 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 LILRA1O75019 489 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 SERPINA3P01011 423 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 TFAP2AP05549 437 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 OCM2P0CE71 109 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 FAHP16930 419 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 GABRA5P31644 462 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 ALDH3B1P43353 468 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 SOX2P48431 317 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 RPS11P62280 158 aaKnown RBP eCLIP10.46□□□□□ -0.73
SDC1-206ENST00000482879 TRAM1Q15629 374 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 NKPD1Q17RQ9 610 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 OR8G5Q8NG78 346 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 FGGYQ96C11 551 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 PLEKHA1Q9HB21 404 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 ZNF275Q9NSD4 429 aaPredicted RBP10.46□□□□□ -0.73
SDC1-206ENST00000482879 CBLN4Q9NTU7 201 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 TMEM100Q9NV29 134 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 NDUFB11Q9NX14 153 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 SF3B6Q9Y3B4 125 aaKnown RBP10.46□□□□□ -0.73
SDC1-206ENST00000482879 RHBDD3Q9Y3P4 386 aa10.46□□□□□ -0.73
SDC1-206ENST00000482879 CHD3Q12873 2000 aaKnown RBP10.46□□□□□ -0.74
SDC1-206ENST00000482879 ZNF816-ZNF321PA0A0X1KG74 233 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 PLSCR5A0PG75 271 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 DHRS7CA6NNS2 312 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 ANKRD30BLA7E2S9 258 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 CD2P06729 351 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 SOD3P08294 240 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 DANCRP0C864 163 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 CD36P16671 472 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 ZNF20P17024 532 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 PSMA1P25786 263 aaKnown RBP10.45□□□□□ -0.74
SDC1-206ENST00000482879 RPL5P46777 297 aaKnown RBP10.45□□□□□ -0.74
SDC1-206ENST00000482879 ALDH3B2P48448 385 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 SWI5Q1ZZU3 235 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 Q499Y3 187 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 ACSM3Q53FZ2 586 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 ZBTB37Q5TC79 503 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 CEACAM19Q7Z692 300 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 FTMTQ8N4E7 242 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 OR13G1Q8NGZ3 307 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 PIGCQ92535 297 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 GTF3AQ92664 365 aaKnown RBP10.45□□□□□ -0.74
SDC1-206ENST00000482879 TMIGD2Q96BF3 282 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 C10orf35Q96D05 121 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 ADAT3Q96EY9 351 aaPredicted RBP10.45□□□□□ -0.74
SDC1-206ENST00000482879 SLC30A2Q9BRI3 323 aa10.45□□□□□ -0.74
SDC1-206ENST00000482879 PAPOLGQ9BWT3 736 aaKnown RBP10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms