RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 C10orf35Q96D05 121 aa12.99□□□□□ -0.33
NPHP4-205ENST00000466897 PGLYRP3Q96LB9 341 aa12.99□□□□□ -0.33
NPHP4-205ENST00000466897 SYT3Q9BQG1 590 aa12.99□□□□□ -0.33
NPHP4-205ENST00000466897 MRPL15Q9P015 296 aaKnown RBP12.99□□□□□ -0.33
NPHP4-205ENST00000466897 MYEF2Q9P2K5 600 aaKnown RBP12.99□□□□□ -0.33
NPHP4-205ENST00000466897 FZR1Q9UM11 496 aa12.99□□□□□ -0.33
NPHP4-205ENST00000466897 HHLA2Q9UM44 414 aa12.99□□□□□ -0.33
NPHP4-205ENST00000466897 SIRT4Q9Y6E7 314 aaPredicted RBP12.99□□□□□ -0.33
NPHP4-205ENST00000466897 V9GYS6 101 aa12.99□□□□□ -0.33
NPHP4-205ENST00000466897 A0A1B0GVI7 797 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 LOC107986453A0A1B0GWG9 222 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 A0A1W2PPW3 197 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 GGT3PA6NGU5 568 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 M0R233 179 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 P2RY10O00398 339 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 TIMM8AO60220 97 aaPredicted RBP12.98□□□□□ -0.33
NPHP4-205ENST00000466897 ADH4P08319 380 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 MAP2K4P45985 399 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 MAP2K3P46734 347 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 TNK1Q13470 666 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 TPBGQ13641 420 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 GFOD2Q3B7J2 385 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 OR2T2Q6IF00 324 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 COMMD2Q86X83 199 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 ZNF676Q8N7Q3 588 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 OR8G5Q8NG78 346 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 OR56B2PQ8NGI1 322 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 OR14K1Q8NGZ2 314 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 MGLLQ99685 303 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 PDCD1LG2Q9BQ51 273 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 SLC22A4Q9H015 551 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 MS4A5Q9H3V2 200 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 TAAR3PQ9P1P4 343 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 NOP16Q9Y3C1 178 aaKnown RBP12.98□□□□□ -0.33
NPHP4-205ENST00000466897 TANC2Q9HCD6 1990 aa12.98□□□□□ -0.33
NPHP4-205ENST00000466897 CACNA1DQ01668 2161 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 PLSCR5A0PG75 271 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 H7C417 338 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 OVOL3O00110 214 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 SYT7O43581 403 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 CST4P01036 141 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 CPEP16870 476 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 CELP19835 753 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 ACKR3P25106 362 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 NKPD1Q17RQ9 610 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 YIF1BQ5BJH7 314 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 SEMA6DQ8NFY4 1073 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 UFD1Q92890 307 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 OPALINQ96PE5 141 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 DIRC2Q96SL1 478 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 SLC30A2Q9BRI3 323 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 ABCB9Q9NP78 766 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 ZDHHC8Q9ULC8 765 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 LAMP3Q9UQV4 416 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 ZNF281Q9Y2X9 895 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 CENPEQ02224 2701 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 UNC79Q9P2D8 2635 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 APCP25054 2843 aa12.97□□□□□ -0.33
NPHP4-205ENST00000466897 ZNF816-ZNF321PA0A0X1KG74 233 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 MAGEA13PA6NCF6 341 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 RAF1P04049 648 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 PAX1P15863 534 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 KRTAP10-9P60411 292 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 RIPPLY1Q0D2K3 151 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 ALKBH6Q3KRA9 238 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 SYT6Q5T7P8 510 aaPredicted RBP12.96□□□□□ -0.33
NPHP4-205ENST00000466897 MS4A15Q8N5U1 240 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 OR13G1Q8NGZ3 307 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 GPR148Q8TDV2 347 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 THRSPQ92748 146 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 GHSRQ92847 366 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 PIGTQ969N2 578 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 FAM71F1Q96KD3 344 aaPredicted RBP12.96□□□□□ -0.33
NPHP4-205ENST00000466897 CCL19Q99731 98 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 SOX7Q9BT81 388 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 VCX3AQ9NNX9 186 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 NKIRAS2Q9NYR9 191 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 PMF1-BGLAPU3KQ54 211 aa12.96□□□□□ -0.33
NPHP4-205ENST00000466897 NBPF19A0A087WUL8 3843 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 ANKRD30BLA7E2S9 258 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 C17orf100A8MU93 164 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 GMDSO60547 372 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 CD55P08174 381 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 SMIM18P0DKX4 95 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 JUNBP17275 347 aaPredicted RBP12.95□□□□□ -0.34
NPHP4-205ENST00000466897 PSMA1P25786 263 aaKnown RBP12.95□□□□□ -0.34
NPHP4-205ENST00000466897 ZNF81P51508 661 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 SLC3A1Q07837 685 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 TRAM1Q15629 374 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 ODF4Q2M2E3 257 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 PCGF3Q3KNV8 242 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 FAM209AQ5JX71 171 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 TMEM42Q69YG0 159 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 Q6ZR03 302 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 KCTD8Q6ZWB6 473 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 PHC2Q8IXK0 858 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 RDH10Q8IZV5 341 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 ZFP41Q8N8Y5 198 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 PP6455Q8WZ26 134 aa12.95□□□□□ -0.34
NPHP4-205ENST00000466897 RGP1Q92546 391 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms