RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 OGFRL1Q5TC84 451 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 HBMQ6B0K9 141 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 TTC33Q6PID6 262 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 NPSR1Q6W5P4 371 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 OAFQ86UD1 273 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 RALGPS2Q86X27 583 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 C17orf82Q86X59 251 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 TMEM25Q86YD3 366 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 FAM71AQ8IYT1 594 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 CYP4Z2PQ8N1L4 340 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 TMEM251Q8N6I4 163 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 LRRC52Q8N7C0 313 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 OR8G5Q8NG78 346 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 OR52E2Q8NGJ4 325 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 ZFP90Q8TF47 636 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 TMEM234Q8WY98 164 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 CHCHD10Q8WYQ3 142 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 NOL4LQ96MY1 436 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 C9orf16Q9BUW7 83 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 C20orf85Q9H1P6 137 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 RPF2Q9H7B2 306 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 ZDHHC4Q9NPG8 344 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 ACOT13Q9NPJ3 140 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 FGFR1OP2Q9NVK5 253 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 NLE1Q9NVX2 485 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 C3orf18Q9UK00 162 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 SNX24Q9Y343 169 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 KCNE3Q9Y6H6 103 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 USH1CQ9Y6N9 552 aa3.78□□□□□ -1.8
CCDC88A-206ENST00000430086 LRRK1Q38SD2 2015 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 IGHV1OR15-1A0A075B7D0 117 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 A0A0G2JRQ6 117 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 GJE1A6NN92 205 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 SYCE1LA8MT33 242 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 LRRN3E7EW58 273 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 K7EMT4 169 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 M0R036 132 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 GABRPO00591 440 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 SLC31A1O15431 190 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 SNAPINO95295 136 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 TTC4O95801 387 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 NQO1P15559 274 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 MYL9P24844 172 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 CCNE1P24864 410 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 FMO3P31513 532 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 HRH1P35367 487 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 HCAR3P49019 387 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 GDI2P50395 445 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 RAP1GDS1P52306 607 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 DLX1P56177 255 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 ZNF45Q02386 682 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 CKAP4Q07065 602 aaKnown RBP3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 TCP10Q12799 353 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 TRIP13Q15645 432 aaPredicted RBP3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 IL17AQ16552 155 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 DNAL1Q4LDG9 190 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 PAGE3Q5JUK9 113 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 FAM45BPQ6NSW5 357 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 UNQ9370/PRO34162Q6UXP9 181 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 HSD17B13Q7Z5P4 300 aaPredicted RBP3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 CBLN2Q8IUK8 224 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 OR1N2Q8NGR9 330 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 FAM45AQ8TCE6 357 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 RILPQ96NA2 401 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 PDCD1LG2Q9BQ51 273 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 SELENOSQ9BQE4 189 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 NICN1Q9BSH3 213 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 OSBPL11Q9BXB4 747 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 PARD6GQ9BYG4 376 aaPredicted RBP3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 OR51V1Q9H2C8 321 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 CENPHQ9H3R5 247 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 FBXL3Q9UKT7 428 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 OR51B2Q9Y5P1 312 aa3.77□□□□□ -1.81
CCDC88A-206ENST00000430086 RAB3GAP2Q9H2M9 1393 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 ISPDA4D126 451 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 C9J4A7 227 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 FTCDNL1E5RQL4 147 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 PANO1I0J062 215 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 HPGDSO60760 199 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 PTTG1O95997 202 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 PTHP01270 115 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 HLA-AP01891 365 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 RETP07949 1114 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 FOLR1P15328 257 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 HIST1H1CP16403 213 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 WARSP23381 471 aaKnown RBP3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 PFN2P35080 140 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 AP3S2P59780 193 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 MXD1Q05195 221 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 EGFEM1PQ0D2K5 195 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 PSG7Q13046 419 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 GUSBP1Q15486 140 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 TRAM1Q15629 374 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 SNCBQ16143 134 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 RFX4Q33E94 735 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 ANKRD22Q5VYY1 191 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 LPCAT4Q643R3 524 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 NIPAL1Q6NVV3 410 aa3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 ZNF530Q6P9A1 599 aaPredicted RBP3.76□□□□□ -1.81
CCDC88A-206ENST00000430086 ZNF620Q6ZNG0 422 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms