RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SLC19A3Q9BZV2 496 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF436Q9C0F3 470 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-205ENST00000392004 METTL17Q9H7H0 456 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-205ENST00000392004 DECR2Q9NUI1 292 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 MRPS18AQ9NVS2 196 aaKnown RBP9.11□□□□□ -0.95
COL6A3-205ENST00000392004 DUX4Q9UBX2 424 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 HHLA2Q9UM44 414 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 TIMM10BQ9Y5J6 103 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 K7ENP7 123 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 TO15178 435 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 ZIC3O60481 467 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 CRTAPO75718 401 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-205ENST00000392004 APOC1P02654 83 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 MTCP1P56278 107 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 RNFT1Q5M7Z0 435 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 SFRP5Q5T4F7 317 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 INO80CQ6PI98 192 aaPredicted RBP9.11□□□□□ -0.95
COL6A3-205ENST00000392004 CD300LDQ6UXZ3 194 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 PLPP7Q8NBV4 271 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 DNAAF1Q8NEP3 725 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 OR10K1Q8NGX5 313 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 GPR148Q8TDV2 347 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 PIK3IP1Q96FE7 263 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 GPR173Q9NS66 373 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 SDHAF2Q9NX18 166 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 AUP1Q9Y679 476 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 HEATR5AQ86XA9 2040 aa9.11□□□□□ -0.95
COL6A3-205ENST00000392004 MEIKINA0A087WXM9 373 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 NKX2-6A6NCS4 301 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 NUPL2O15504 423 aaKnown RBP9.1□□□□□ -0.95
COL6A3-205ENST00000392004 ERCC1P07992 297 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-205ENST00000392004 PGAM2P15259 253 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 ZNF16P17020 682 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-205ENST00000392004 CCR6P51684 374 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 MAP2K6P52564 334 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 PDCD1Q15116 288 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 TMEM81Q6P7N7 255 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 TMPRSS11FQ6ZWK6 438 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 C17orf47Q8NEP4 570 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 NOXO1Q8NFA2 376 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 OR5T2Q8NGG2 359 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 OR5L1Q8NGL2 311 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 OR56B4Q8NH76 319 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 COQ8AQ8NI60 647 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 HGDQ93099 445 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 C7orf50Q9BRJ6 194 aaKnown RBP9.1□□□□□ -0.95
COL6A3-205ENST00000392004 ATG5Q9H1Y0 275 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 ISG20L2Q9H9L3 353 aaKnown RBP9.1□□□□□ -0.95
COL6A3-205ENST00000392004 SLCO1C1Q9NYB5 712 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 TOR1AO14656 332 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 OR7C1O76099 320 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-205ENST00000392004 MT-ND4P03905 459 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 ACSM4P0C7M7 580 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 TNFAIP8L1Q8WVP5 186 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 ELMOD3Q96FG2 381 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 DLL4Q9NR61 685 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 KIF25Q9UIL4 384 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-205ENST00000392004 SLC22A23A1A5C7 686 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 KRBOX1C9JBD0 128 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 DCTN6O00399 190 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 TFP02787 698 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 ALDOBP05062 364 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 ZP3P21754 424 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 EDDM3AQ14507 147 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 ZMYND11Q15326 602 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 OR8B8Q15620 311 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 FAM27D1Q5T7N8 215 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 IL20Q9NYY1 176 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 CGGBP1Q9UFW8 167 aaPredicted RBP9.1□□□□□ -0.95
COL6A3-205ENST00000392004 BPTFQ12830 3046 aa9.1□□□□□ -0.95
COL6A3-205ENST00000392004 SURF4O15260 269 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 RAD52P43351 418 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 LTBQ06643 244 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 C1orf185Q5T7R7 199 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 SFXN4Q6P4A7 337 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 FAM214BQ7L5A3 538 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 PRSS27Q9BQR3 290 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 FUZQ9BT04 418 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 HEXA-AS1Q9H8Q6 139 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 GPR84Q9NQS5 396 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 MAN2C1Q9NTJ4 1040 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 SEMA5BQ9P283 1151 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 MGAT4CQ9UBM8 478 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 FBXL3Q9UKT7 428 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 PIGLQ9Y2B2 252 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 RPS10-NUDT3A0A1W2PQS6 291 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 C16orf97H3BN30 126 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 MPC2O95563 127 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 HTR1FP30939 366 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 SCGB2B2Q4G0G5 96 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 MESTQ5EB52 335 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 OR6M1Q8NGM8 313 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 EXOSC3Q9NQT5 275 aaKnown RBP9.09□□□□□ -0.95
COL6A3-205ENST00000392004 OR52A1Q9UKL2 312 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 FREM1Q5H8C1 2179 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 LINC01387J3KSC0 135 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 SNAPC5O75971 98 aa9.09□□□□□ -0.95
COL6A3-205ENST00000392004 HOXD4P09016 255 aaPredicted RBP9.09□□□□□ -0.95
COL6A3-205ENST00000392004 OR2T7P0C7T2 308 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms