RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CAPZA1P52907 286 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 ZNF45Q02386 682 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 RIPPLY1Q0D2K3 151 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 TNK1Q13470 666 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 ZNF846Q147U1 533 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 GFOD2Q3B7J2 385 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 IDNKQ5T6J7 187 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 GLT8D1Q68CQ7 371 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 SEZ6L2Q6UXD5 910 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 RFPL4BQ6ZWI9 263 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 MYPOPQ86VE0 399 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 ZNF101Q8IZC7 436 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 GALNT11Q8NCW6 608 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 OR51A2Q8NGJ7 313 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 OR5L1Q8NGL2 311 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 OR6M1Q8NGM8 313 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 OR2AE1Q8NHA4 323 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 CNTNAP3BQ96NU0 1288 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 TECTBQ96PL2 329 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 CNTNAP3Q9BZ76 1288 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 ACTR6Q9GZN1 396 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 METTL17Q9H7H0 456 aaPredicted RBP12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 CDH20Q9HBT6 801 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 SH3BGRL2Q9UJC5 107 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 SPATA2Q9UM82 520 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 OSGIN2Q9Y236 505 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 N6AMT1Q9Y5N5 214 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 ETV7Q9Y603 341 aa12.89□□□□□ -0.35
CCDC88C-202ENST00000334448 C16orf97H3BN30 126 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 SMPD2O60906 423 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 CECR9P0C854 216 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 SLC2A2P11168 524 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 PPP3CBP16298 524 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 PTBP1P26599 531 aaKnown RBP eCLIP12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 TNFSF8P32971 234 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 GNALP38405 381 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 ASCL1P50553 236 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 GK2Q14410 553 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 UNQ6126/PRO20091Q6UXV3 157 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 FBXW12Q6X9E4 464 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 NCCRP1Q6ZVX7 275 aaPredicted RBP12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 LAX1Q8IWV1 398 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 OR13C9Q8NGT0 318 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 UBASH3BQ8TF42 649 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 PIGTQ969N2 578 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 SPSB1Q96BD6 273 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 SOSTQ9BQB4 213 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 PALMDQ9NP74 551 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 ABCB9Q9NP78 766 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 STEAP1Q9UHE8 339 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 ADAM30Q9UKF2 790 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 PIGLQ9Y2B2 252 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 STARD10Q9Y365 291 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 NBEAQ8NFP9 2946 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 IGSF10Q6WRI0 2623 aa12.88□□□□□ -0.35
CCDC88C-202ENST00000334448 IGHV1-18A0A0C4DH31 117 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 IGKV1-9A0A0C4DH69 117 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 ZNF816-ZNF321PA0A0X1KG74 233 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 A0A1W2PR80 420 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 CCL21O00585 134 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 NGFP01138 241 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 APOA1P02647 267 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 MAS1P04201 325 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 CCL2P13500 99 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 FAHP16930 419 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 CD40LGP29965 261 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 FAM27E3Q08E93 113 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 RIN1Q13671 783 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 PPA1Q15181 289 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 TAB1Q15750 504 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 ST3GAL2Q16842 350 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 SPANXN2Q5MJ10 180 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 CLVS2Q5SYC1 327 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 MTFR2Q6P444 385 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 METAP1DQ6UB28 335 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 LRRC28Q86X40 367 aaPredicted RBP12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 DNAAF1Q8NEP3 725 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 CSNK2A3Q8NEV1 391 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 TRMT10AQ8TBZ6 339 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 SLC25A28Q96A46 364 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 MUCL1Q96DR8 90 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 COMMD3Q9UBI1 195 aa12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 EIF3KQ9UBQ5 218 aaKnown RBP12.87□□□□□ -0.35
CCDC88C-202ENST00000334448 KALRNO60229 2985 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 IGHV2OR16-5A0A0B4J2B6 119 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 A0A1B0GUH1 482 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 RGS5O15539 181 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 CST4P01036 141 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 CCNOP22674 350 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 SPOCK1Q08629 439 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 RAB11BQ15907 218 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 MRPL21Q7Z2W9 205 aaKnown RBP12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 LGALS14Q8TCE9 139 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 BORCS5Q969J3 196 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 LIN7BQ9HAP6 207 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 NEK6Q9HC98 313 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 CYSLTR2Q9NS75 346 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 FBLN5Q9UBX5 448 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 V9GYH0 126 aa12.86□□□□□ -0.35
CCDC88C-202ENST00000334448 RTTNQ86VV8 2226 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms