RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 LYNP07948 512 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 KITLGP21583 273 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 FAM120AOSQ5T036 256 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 RPL13AP3Q6NVV1 102 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 FBXW12Q6X9E4 464 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 OR8G5Q8NG78 346 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 OR10AC1Q8NH08 325 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 SGCDQ92629 289 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 MEGF10Q96KG7 1140 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 ZNF488Q96MN9 340 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 ZNF582Q96NG8 517 aaPredicted RBP4.79□□□□□ -1.64
CPNE3-208ENST00000614678 REPIN1Q9BWE0 567 aaKnown RBP4.79□□□□□ -1.64
CPNE3-208ENST00000614678 SP140LQ9H930 580 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 MARCH7Q9H992 704 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 ELOVL3Q9HB03 270 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 BARX1Q9HBU1 254 aaPredicted RBP4.79□□□□□ -1.64
CPNE3-208ENST00000614678 MRM2Q9UI43 246 aaKnown RBP4.79□□□□□ -1.64
CPNE3-208ENST00000614678 GTF2A1LQ9UNN4 478 aa4.79□□□□□ -1.64
CPNE3-208ENST00000614678 RHBDL1O75783 438 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 TACSTD2P09758 323 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 CALCBP10092 127 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 COX5BP10606 129 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 NR2C1P13056 603 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 PAX6P26367 422 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 ERVFRD-1P60508 538 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 RPS23P62266 143 aaKnown RBP4.78□□□□□ -1.64
CPNE3-208ENST00000614678 TAF13Q15543 124 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 CR1LQ2VPA4 569 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 XAF1Q6GPH4 301 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 APH1BQ8WW43 257 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 NEU4Q8WWR8 484 aaPredicted RBP4.78□□□□□ -1.64
CPNE3-208ENST00000614678 REEP6Q96HR9 211 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 DUX5Q96PT3 197 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 SMURF1Q9HCE7 757 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 TMEM106BQ9NUM4 274 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 HIF1ANQ9NWT6 349 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 PPP1R3CQ9UQK1 317 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 ANKRD61A6NGH8 418 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 ZNF878C9JN71 531 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 PLPP2O43688 288 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 CRLF1O75462 422 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 IFNGP01579 166 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 ACHEP22303 614 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 CD80P33681 288 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 TP53I3Q53FA7 332 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 KIAA2026Q5HYC2 2103 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 FAHD2BQ6P2I3 314 aaPredicted RBP4.78□□□□□ -1.64
CPNE3-208ENST00000614678 ENTHD1Q8IYW4 607 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 PARP8Q8N3A8 854 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 OR51A4Q8NGJ6 313 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 CNIH3Q8TBE1 160 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 TMEM163Q8TC26 289 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 OR51E1Q8TCB6 317 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 SNX33Q8WV41 574 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 ORAI1Q96D31 301 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 FAHD2AQ96GK7 314 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 PLEKHA8Q96JA3 519 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 FAM71F1Q96KD3 344 aaPredicted RBP4.78□□□□□ -1.64
CPNE3-208ENST00000614678 KCNJ15Q99712 375 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 GABARAPL1Q9H0R8 117 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 MMADHCQ9H3L0 296 aaPredicted RBP4.78□□□□□ -1.64
CPNE3-208ENST00000614678 ISG20L2Q9H9L3 353 aaKnown RBP4.78□□□□□ -1.64
CPNE3-208ENST00000614678 SNTG1Q9NSN8 517 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 FAM206AQ9NX38 181 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 CTSZQ9UBR2 303 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 hCG_38984A0A1B0GV85 526 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 E9PI62 339 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 E9PQ18 207 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 H2BFMP0C1H6 154 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 RAC2P15153 192 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 AMY2BP19961 511 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 HSD11B1P28845 292 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 ZNF85Q03923 595 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 GK3PQ14409 553 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 HIPK1Q86Z02 1210 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 NPRL2Q8WTW4 380 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 NRG4Q8WWG1 115 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 HPSE2Q8WWQ2 592 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 ACOXLQ9NUZ1 547 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 LAMP5Q9UJQ1 280 aa4.78□□□□□ -1.64
CPNE3-208ENST00000614678 ZNF850A8MQ14 1090 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 IQCF6A8MYZ5 107 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.77□□□□□ -1.65
CPNE3-208ENST00000614678 FAM20BO75063 409 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 SRSF10O75494 262 aaKnown RBP4.77□□□□□ -1.65
CPNE3-208ENST00000614678 SLC25A16P16260 332 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 FAHP16930 419 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 GSK3AP49840 483 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 ARHGDIAP52565 204 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 TPTEP56180 551 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 NANOS3P60323 173 aaKnown RBP4.77□□□□□ -1.65
CPNE3-208ENST00000614678 RCN1Q15293 331 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 HFEQ30201 348 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 LAIR2Q6ISS4 152 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 MEPCEQ7L2J0 689 aaKnown RBP4.77□□□□□ -1.65
CPNE3-208ENST00000614678 MRPL21Q7Z2W9 205 aaKnown RBP4.77□□□□□ -1.65
CPNE3-208ENST00000614678 PDZD9Q8IXQ8 264 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 PQLC1Q8N2U9 271 aa4.77□□□□□ -1.65
CPNE3-208ENST00000614678 RPL3LQ92901 407 aaKnown RBP4.77□□□□□ -1.65
CPNE3-208ENST00000614678 NRBF2Q96F24 287 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms