RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 RPRMLQ8N4K4 120 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 OR52H1Q8NGJ2 320 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 OR13C9Q8NGT0 318 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 OR2AE1Q8NHA4 323 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 NANOS1Q8WY41 292 aaKnown RBP9.15□□□□□ -0.94
SS18-217ENST00000580958 REEP6Q96HR9 211 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 CCDC32Q9BV29 185 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 SP140LQ9H930 580 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 LIN7BQ9HAP6 207 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 CYSLTR2Q9NS75 346 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 C14orf119Q9NWQ9 140 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 ATPIF1Q9UII2 106 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 PROCRQ9UNN8 238 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 V9GYS6 101 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 CACNA1AO00555 2505 aa9.15□□□□□ -0.94
SS18-217ENST00000580958 CHD8Q9HCK8 2581 aa9.15□□□□□ -0.95
SS18-217ENST00000580958 ESPL1Q14674 2120 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 CIB4A0PJX0 185 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 SLC17A2O00624 439 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 RAD51DO75771 328 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 TNFSF13O75888 250 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 DHRS3O75911 302 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 LYZL6O75951 148 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 CD37P11049 281 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 RAB3AP20336 220 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 PTBP1P26599 531 aaKnown RBP eCLIP9.14□□□□□ -0.953e-9■■■■□ 23.3
SS18-217ENST00000580958 THBS4P35443 961 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 TALDO1P37837 337 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 PLA2G7Q13093 441 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 TSC22D1Q15714 1073 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 BAK1Q16611 211 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 RGS21Q2M5E4 152 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 FAM166AQ6J272 317 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 ZNF529Q6P280 563 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 TREML4Q6UXN2 200 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 UNQ6494/PRO21346Q6UXR6 183 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 GFRALQ6UXV0 394 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 Q6ZSR3 168 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 Q6ZT83 130 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 DPPA2Q7Z7J5 298 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 MDP1Q86V88 176 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 CMTM4Q8IZR5 234 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 OR5AS1Q8N127 324 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 JAGN1Q8N5M9 183 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 GDPD1Q8N9F7 314 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 CCDC54Q8NEL0 328 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 STARD4Q96DR4 205 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 SLC25A38Q96DW6 304 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 FAM122AQ96E09 287 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 CMTM3Q96MX0 182 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 MRI1Q9BV20 369 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 OPN3Q9H1Y3 402 aaPredicted RBP9.14□□□□□ -0.95
SS18-217ENST00000580958 KCNK15Q9H427 330 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 PPP1R3EQ9H7J1 279 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 PLEKHA1Q9HB21 404 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 PLSCR4Q9NRQ2 329 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 TUBD1Q9UJT1 453 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 PIGLQ9Y2B2 252 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 ETV7Q9Y603 341 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 SHANK1Q9Y566 2161 aa9.14□□□□□ -0.95
SS18-217ENST00000580958 A0A0G2JMP0 313 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 A0A0X1KG70 313 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 J3QL48 77 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 TOXO94900 526 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 CNOT4O95628 575 aaKnown RBP9.13□□□□□ -0.95
SS18-217ENST00000580958 CGAP01215 116 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 CRHP06850 196 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 CSF3P09919 207 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 IL7P13232 177 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 CCL2P13500 99 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 EDN3P14138 238 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 FAHP16930 419 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 COX5AP20674 150 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 CCNOP22674 350 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 STOMP27105 288 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 CFPP27918 469 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 HTR2CP28335 458 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 POU3F4P49335 361 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 UBE2NP61088 152 aaKnown RBP9.13□□□□□ -0.95
SS18-217ENST00000580958 TGFBR3Q03167 851 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 PLP2Q04941 152 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 RIN1Q13671 783 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 GABRA6Q16445 453 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 GSG1Q2KHT4 349 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 C3P1Q6ZMU1 363 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 PGAP1Q75T13 922 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 ZNF584Q8IVC4 421 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 IZUMO1Q8IYV9 350 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 CENPSQ8N2Z9 138 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 NKAIN3Q8N8D7 197 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 ZNF610Q8N9Z0 462 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 NAXEQ8NCW5 288 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 OR4M2Q8NGB6 313 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 OR51D1Q8NGF3 324 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 OR52N4Q8NGI2 321 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 OR5D14Q8NGL3 314 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 OR6M1Q8NGM8 313 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 SYNPRQ8TBG9 265 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 SLC25A28Q96A46 364 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 FAM3DQ96BQ1 224 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms