RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 HIF1ANQ9NWT6 349 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 AP4S1Q9Y587 144 aa6.85□□□□□ -1.31
VPS53-214ENST00000572607 A0A0G2JMP0 313 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.84□□□□□ -1.31
VPS53-214ENST00000572607 A0A0X1KG70 313 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 G3V2T6 193 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 WNT9BO14905 357 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 IGHV2-5P01817 119 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 LYNP07948 512 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 H2BFMP0C1H6 154 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 SBK2P0C263 348 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 CFL1P23528 166 aaKnown RBP6.84□□□□□ -1.31
VPS53-214ENST00000572607 CX3CR1P49238 355 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 CRISP1P54107 249 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 LMO4P61968 165 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 BTG1P62324 171 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 OR8G1Q15617 311 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 SNCBQ16143 134 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 SNAPC1Q16533 368 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 PCK2Q16822 640 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 TIGD6Q17RP2 521 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 RSPO1Q2MKA7 263 aaPredicted RBP6.84□□□□□ -1.31
VPS53-214ENST00000572607 TMEM155Q4W5P6 130 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 LINC01590Q5TEZ4 76 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 FAHD2BQ6P2I3 314 aaPredicted RBP6.84□□□□□ -1.31
VPS53-214ENST00000572607 CCDC121Q6ZUS5 278 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 ZNF771Q7L3S4 317 aaPredicted RBP6.84□□□□□ -1.31
VPS53-214ENST00000572607 DPY19L4Q7Z388 723 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 NAA40Q86UY6 237 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 KRTAP19-1Q8IUB9 90 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 CPOQ8IVL8 374 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 PARP8Q8N3A8 854 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 OR4M2Q8NGB6 313 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 OR52H1Q8NGJ2 320 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 OR10S1Q8NGN2 331 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 ZMYND19Q96E35 227 aaPredicted RBP6.84□□□□□ -1.31
VPS53-214ENST00000572607 FAHD2AQ96GK7 314 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 PGAM5Q96HS1 289 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 ABHD6Q9BV23 337 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 OR10A2Q9H208 303 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 TVP23BQ9NYZ1 205 aa6.84□□□□□ -1.31
VPS53-214ENST00000572607 H2AFY2Q9P0M6 372 aaPredicted RBP6.84□□□□□ -1.31
VPS53-214ENST00000572607 ANKRD30BLA7E2S9 258 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 CD300LBA8K4G0 201 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 RNF212BA8MTL3 300 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 F5H5P2 479 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 TMEM178BH3BS89 294 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 MLNRO43193 412 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 GMDSO60547 372 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 FOXH1O75593 365 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 PNPP00491 289 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 IGHV2-70P01814 119 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 HLA-DPB1P04440 258 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 SLC2A1P11166 492 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 GATA3P23771 443 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 OTX1P32242 354 aaPredicted RBP6.83□□□□□ -1.32
VPS53-214ENST00000572607 THBS2P35442 1172 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 GNALP38405 381 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 MDH2P40926 338 aaKnown RBP6.83□□□□□ -1.32
VPS53-214ENST00000572607 ESRRGP62508 458 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 CDK5Q00535 292 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 ZNF92Q03936 586 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 SNAI3Q3KNW1 292 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 SPRNQ5BIV9 151 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 GLYATL3Q5SZD4 288 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 TMEM236Q5W0B7 351 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 FAHD1Q6P587 224 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 FAM57BQ71RH2 274 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 RHOUQ7L0Q8 258 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 MOGAT3Q86VF5 341 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 TIGD4Q8IY51 512 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 C10orf67Q8IYJ2 551 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 FTMTQ8N4E7 242 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 CELF2-AS1Q8N7Q2 184 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 SPERTQ8NA61 448 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 OR8S1Q8NH09 359 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 OR2AE1Q8NHA4 323 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 OTOSQ8NHW6 89 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 THEM6Q8WUY1 208 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 RNF133Q8WVZ7 376 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 TMEM158Q8WZ71 300 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 ERGIC1Q969X5 290 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 UTP4Q969X6 686 aaKnown RBP6.83□□□□□ -1.32
VPS53-214ENST00000572607 ADAT1Q9BUB4 502 aaKnown RBP6.83□□□□□ -1.32
VPS53-214ENST00000572607 GABARAPL1Q9H0R8 117 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 MRPL18Q9H0U6 180 aaKnown RBP6.83□□□□□ -1.32
VPS53-214ENST00000572607 NIPAL2Q9H841 368 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 MARCH7Q9H992 704 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 FN3KRPQ9HA64 309 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 GCM1Q9NP62 436 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 DNAJC27Q9NZQ0 273 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 MRPL15Q9P015 296 aaKnown RBP6.83□□□□□ -1.32
VPS53-214ENST00000572607 LAMP5Q9UJQ1 280 aa6.83□□□□□ -1.32
VPS53-214ENST00000572607 PPIAL4EA0A075B759 164 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 IGHV3-64DA0A0J9YX35 117 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 PPIAL4DF5H284 164 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 H0YL77 283 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 J3QLI3 93 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 PLPP2O43688 288 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 SELENOFO60613 162 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms