RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 ZNF345Q14585 488 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 TMEM132DQ14C87 1099 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 PCK2Q16822 640 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 GSG1Q2KHT4 349 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 TCTN1Q2MV58 587 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 CBWD3Q5JTY5 395 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 CTSL3PQ5NE16 218 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 CBWD5Q5RIA9 395 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 OTUD3Q5T2D3 398 aaPredicted RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 DCAF12L2Q5VW00 463 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 CST9Q5W186 159 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 GGNBP1Q5YKI7 109 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 TMEM225Q6GV28 225 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ZNF770Q6IQ21 691 aaPredicted RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 SLC39A4Q6P5W5 647 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 TEX38Q6PEX7 206 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ZNF613Q6PF04 617 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 INO80CQ6PI98 192 aaPredicted RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 TRMT1LQ7Z2T5 733 aaKnown RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 OR2W3Q7Z3T1 314 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ZNF546Q86UE3 836 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 WDR5BQ86VZ2 330 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 SERPINA9Q86WD7 417 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 TMEM183AQ8IXX5 376 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 UBALD2Q8IYN6 164 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 CMTM8Q8IZV2 173 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 GTPBP8Q8N3Z3 284 aaPredicted RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 BMPERQ8N8U9 685 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 RELL2Q8NC24 303 aaPredicted RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 NECAP1Q8NC96 275 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 HJURPQ8NCD3 748 aaPredicted RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 CCNYQ8ND76 341 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 OR2AK2Q8NG84 335 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 OR4A4PQ8NGN8 299 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 OR1J4Q8NGS1 313 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 OR2A12Q8NGT7 310 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 OR10X1Q8NGY0 326 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 OR56B4Q8NH76 319 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ZNF675Q8TD23 568 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 APH1BQ8WW43 257 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 DNAJB3Q8WWF6 145 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 PNPLA2Q96AD5 504 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 MIB2Q96AX9 1013 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 DIRAS2Q96HU8 199 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 CPB2Q96IY4 423 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 GUCD1Q96NT3 240 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 OR2A7Q96R45 310 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 IL4I1Q96RQ9 567 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 PCYT2Q99447 389 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 COPS8Q99627 209 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 MIEN1Q9BRT3 115 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ABHD14AQ9BUJ0 271 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ALG12Q9BV10 488 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 PHF7Q9BWX1 381 aaPredicted RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 CACNG6Q9BXT2 260 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 MS4A8Q9BY19 250 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 LAT2Q9GZY6 243 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 RNF167Q9H6Y7 350 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 AAMDCQ9H7C9 122 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 TMEM27Q9HBJ8 222 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 OR2S2Q9NQN1 319 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 G6PC2Q9NQR9 355 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 FSCN3Q9NQT6 498 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 TM7SF3Q9NS93 570 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 SLC2A8Q9NY64 477 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 GPR83Q9NYM4 423 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 OR6C3Q9NZP0 311 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ABI3Q9P2A4 366 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 B3GAT1Q9P2W7 334 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 VPS29Q9UBQ0 182 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 RPS6KB2Q9UBS0 482 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 ZNF230Q9UIE0 474 aaPredicted RBP2.87□□□□□ -1.95
VPS35-208ENST00000568612 IKZF2Q9UKS7 526 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 EMCNQ9ULC0 261 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 FOXJ3Q9UPW0 622 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 BTRCQ9Y297 605 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 STRCQ7RTU9 1775 aa2.87□□□□□ -1.95
VPS35-208ENST00000568612 PDCD11Q14690 1871 aaKnown RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 COL1A1P02452 1464 aaPredicted RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 A0A0D9SG52 128 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ELOVL7A1L3X0 281 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 RNF222A6NCQ9 220 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 NKX2-6A6NCS4 301 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ANKUB1A6NFN9 424 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 ANKRD61A6NGH8 418 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 TVP23AA6NH52 213 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 DHRS7CA6NNS2 312 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 FAM157AC9JC47 383 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 E9PQ18 207 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 M0QZQ0 153 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 M0R036 132 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 FXYD1O00168 92 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 RBFOX2O43251 390 aaKnown RBP eCLIP2.86□□□□□ -1.95
VPS35-208ENST00000568612 ZNF208O43345 1280 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 OR7C2O60412 319 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 HIST1H2BKO60814 126 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 DUSP11O75319 330 aaKnown RBP2.86□□□□□ -1.95
VPS35-208ENST00000568612 TOXO94900 526 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 S1PR2O95136 353 aa2.86□□□□□ -1.95
VPS35-208ENST00000568612 SCELO95171 688 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms