RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 OR4C6Q8NH72 309 aa11.89□□□□□ -0.51
CLK3-206ENST00000562078 GPX8Q8TED1 209 aa11.89□□□□□ -0.51
CLK3-206ENST00000562078 ARSGQ96EG1 525 aa11.89□□□□□ -0.51
CLK3-206ENST00000562078 PACRGQ96M98 296 aaPredicted RBP11.89□□□□□ -0.51
CLK3-206ENST00000562078 PHB2Q99623 299 aa11.89□□□□□ -0.51
CLK3-206ENST00000562078 FAM60AQ9NP50 221 aa11.89□□□□□ -0.51
CLK3-206ENST00000562078 HAO2Q9NYQ3 351 aa11.89□□□□□ -0.51
CLK3-206ENST00000562078 TRBV6-7A0A0A0MS04 114 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 DUXAA6NLW8 204 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 ZNF727A8MUV8 499 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 ADAM10O14672 748 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 GPRIN2O60269 458 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 THBS1P07996 1170 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 CSRP1P21291 193 aaKnown RBP11.88□□□□□ -0.51
CLK3-206ENST00000562078 CD81P60033 236 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 SKP1P63208 163 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 COTL1Q14019 142 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 EIF2B1Q14232 305 aaKnown RBP11.88□□□□□ -0.51
CLK3-206ENST00000562078 ARMC6Q6NXE6 501 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 ZNF343Q6P1L6 599 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 ZNRF4Q8WWF5 429 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 SYT4Q9H2B2 425 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 ZMAT3Q9HA38 289 aaKnown RBP11.88□□□□□ -0.51
CLK3-206ENST00000562078 TAF9BQ9HBM6 251 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 FAM86C1Q9NVL1 165 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 OR5AC2Q9NZP5 309 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 OR14J1Q9UGF5 321 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 TMED7Q9Y3B3 224 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 WDR45Q9Y484 360 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 SPACA6W5XKT8 324 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 MUC3AQ02505 3323 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 CENPVL1A0A0U1RR11 272 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 RPP14O95059 124 aaKnown RBP11.88□□□□□ -0.51
CLK3-206ENST00000562078 CXCL1P09341 107 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 OR2T7P0C7T2 308 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 NKX6-1P78426 367 aaPredicted RBP11.88□□□□□ -0.51
CLK3-206ENST00000562078 ARHGAP40Q5TG30 622 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 ZNF227Q86WZ6 799 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 OR4S1Q8NGB4 309 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 OR2T27Q8NH04 317 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 OR5R1Q8NH85 324 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 SEH1LQ96EE3 360 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 Q96M85 177 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 CNN2Q99439 309 aaKnown RBP11.88□□□□□ -0.51
CLK3-206ENST00000562078 PRSS27Q9BQR3 290 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 TMEM208Q9BTX3 173 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 EIF5A2Q9GZV4 153 aaKnown RBP11.88□□□□□ -0.51
CLK3-206ENST00000562078 PARP11Q9NR21 331 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 ZNF443Q9Y2A4 671 aaPredicted RBP11.88□□□□□ -0.51
CLK3-206ENST00000562078 POMT1Q9Y6A1 747 aa11.88□□□□□ -0.51
CLK3-206ENST00000562078 PRR32B1ATL7 298 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 CYR61O00622 381 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 GPANK1O95872 356 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 DHPSP49366 369 aaPredicted RBP11.87□□□□□ -0.51
CLK3-206ENST00000562078 SULT1A2P50226 295 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 ACTBP60709 375 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 ACTG1P63261 375 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 EXOSC7Q15024 291 aaKnown RBP11.87□□□□□ -0.51
CLK3-206ENST00000562078 SLC25A42Q86VD7 318 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 FOXRED2Q8IWF2 684 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 CA13Q8N1Q1 262 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 SLC2A12Q8TD20 617 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 THOC3Q96J01 351 aaKnown RBP11.87□□□□□ -0.51
CLK3-206ENST00000562078 KLHL28Q9NXS3 571 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 ZNF223Q9UK11 482 aaPredicted RBP11.87□□□□□ -0.51
CLK3-206ENST00000562078 CDV3Q9UKY7 258 aaKnown RBP11.87□□□□□ -0.51
CLK3-206ENST00000562078 STARD10Q9Y365 291 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 URGCP-MRPS24S4R325 110 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.87□□□□□ -0.51
CLK3-206ENST00000562078 A0A1W2PR77 199 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 IL18BPO95998 194 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 F13BP05160 661 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 CD1AP06126 327 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 FBXO45P0C2W1 286 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 AKR1C4P17516 323 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 UBE2V2Q15819 145 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 GUK1Q16774 197 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 THEM4Q5T1C6 240 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 AKR1C8PQ5T2L2 129 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 FHL5Q5TD97 284 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 ZNF615Q8N8J6 731 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 ADAD2Q8NCV1 583 aaKnown RBP11.87□□□□□ -0.51
CLK3-206ENST00000562078 BEND2Q8NDZ0 799 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 OR9A4Q8NGU2 314 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 ZNF563Q8TA94 476 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 MUCL1Q96DR8 90 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 NOL4LQ96MY1 436 aaPredicted RBP11.87□□□□□ -0.51
CLK3-206ENST00000562078 LRFN5Q96NI6 719 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 SCRT1Q9BWW7 348 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 C19orf53Q9UNZ5 99 aaPredicted RBP11.87□□□□□ -0.51
CLK3-206ENST00000562078 HS3ST3B1Q9Y662 390 aa11.87□□□□□ -0.51
CLK3-206ENST00000562078 ASXL3Q9C0F0 2248 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 DLEU1O43261 78 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 RAMP1O60894 148 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 PTBP3O95758 552 aaKnown RBP11.86□□□□□ -0.51
CLK3-206ENST00000562078 AGR2O95994 175 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 TRGC2P03986 189 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 OR13C7P0DN81 318 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 MAP3K8P41279 467 aa11.86□□□□□ -0.51
CLK3-206ENST00000562078 ARHGAP11BQ3KRB8 267 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms