RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 TOR2AQ5JU69 321 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 RHBDD2Q6NTF9 364 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 FAM219AQ8IW50 185 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 PSMF1Q92530 271 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 LIN37Q96GY3 246 aaPredicted RBP14.01□□□□□ -0.17
CUX1-211ENST00000546411 PGLYRP3Q96LB9 341 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 AIFM2Q9BRQ8 373 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 TCRBV16S1A1N1A0A5B0 115 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 CD200R1LQ6Q8B3 271 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 ZSCAN4Q8NAM6 433 aaPredicted RBP14.01□□□□□ -0.17
CUX1-211ENST00000546411 SCARB1Q8WTV0 552 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 CTHRC1Q96CG8 243 aa14.01□□□□□ -0.17
CUX1-211ENST00000546411 ZNF2Q9BSG1 426 aaPredicted RBP14.01□□□□□ -0.17
CUX1-211ENST00000546411 ZNF728P0DKX0 622 aa14□□□□□ -0.17
CUX1-211ENST00000546411 DUSP1P28562 367 aa14□□□□□ -0.17
CUX1-211ENST00000546411 CDC20BQ86Y33 519 aa14□□□□□ -0.17
CUX1-211ENST00000546411 OR5AS1Q8N127 324 aa14□□□□□ -0.17
CUX1-211ENST00000546411 OR1S1Q8NH92 325 aa14□□□□□ -0.17
CUX1-211ENST00000546411 TMEM231Q9H6L2 316 aa14□□□□□ -0.17
CUX1-211ENST00000546411 CRLF2Q9HC73 371 aa14□□□□□ -0.17
CUX1-211ENST00000546411 NOTCH4Q99466 2003 aa14□□□□□ -0.17
CUX1-211ENST00000546411 TOR1AO14656 332 aa14□□□□□ -0.17
CUX1-211ENST00000546411 IFNA5P01569 189 aa14□□□□□ -0.17
CUX1-211ENST00000546411 TPOP07202 933 aa14□□□□□ -0.17
CUX1-211ENST00000546411 ACSM4P0C7M7 580 aa14□□□□□ -0.17
CUX1-211ENST00000546411 MEIKINA0A087WXM9 373 aa14□□□□□ -0.17
CUX1-211ENST00000546411 SNRPGP15A8MWD9 76 aa14□□□□□ -0.17
CUX1-211ENST00000546411 TGFBR3LH3BV60 316 aa14□□□□□ -0.17
CUX1-211ENST00000546411 ZNF169Q14929 603 aaPredicted RBP14□□□□□ -0.17
CUX1-211ENST00000546411 TMEM217Q8N7C4 229 aa14□□□□□ -0.17
CUX1-211ENST00000546411 NOXO1Q8NFA2 376 aa14□□□□□ -0.17
CUX1-211ENST00000546411 OR5T1Q8NG75 326 aa14□□□□□ -0.17
CUX1-211ENST00000546411 OR51F2Q8NH61 342 aa14□□□□□ -0.17
CUX1-211ENST00000546411 ZNRF4Q8WWF5 429 aa14□□□□□ -0.17
CUX1-211ENST00000546411 MTCL1Q9Y4B5 1905 aaKnown RBP14□□□□□ -0.17
CUX1-211ENST00000546411 VAMP5O95183 116 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 LINC00271P0C7V0 271 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 TUBG1P23258 451 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 RBP2P50120 134 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 CLDN15P56746 228 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 CEACAM16Q2WEN9 425 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 ZNF721Q8TF20 911 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 MCHR2Q969V1 340 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 MAP6Q96JE9 813 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 RPS10P5Q9NQ39 176 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 SH3BGRL2Q9UJC5 107 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 MDC1Q14676 2089 aaKnown RBP13.99□□□□□ -0.17
CUX1-211ENST00000546411 OR5H15A6NDH6 313 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 ZNF14P17017 642 aaPredicted RBP13.99□□□□□ -0.17
CUX1-211ENST00000546411 INSM1Q01101 510 aaPredicted RBP13.99□□□□□ -0.17
CUX1-211ENST00000546411 RASL10BQ96S79 203 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 DEFB127Q9H1M4 99 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 EXOSC3Q9NQT5 275 aaKnown RBP13.99□□□□□ -0.17
CUX1-211ENST00000546411 COL4A6Q14031 1691 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 SPTBN1Q01082 2364 aaKnown RBP13.99□□□□□ -0.17
CUX1-211ENST00000546411 SMCO3A2RU48 225 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 EFSO43281 561 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 SLC34A2O95436 690 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 EPHA8P29322 1005 aaPredicted RBP13.99□□□□□ -0.17
CUX1-211ENST00000546411 PLA2G7Q13093 441 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 ZNF658BQ4V348 819 aaPredicted RBP13.99□□□□□ -0.17
CUX1-211ENST00000546411 PLA1AQ53H76 456 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 OR4D10Q8NGI6 311 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 ARHGAP5-AS1Q96IT6 56 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 ZNF416Q9BWM5 594 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 TRPM7Q96QT4 1865 aa13.99□□□□□ -0.17
CUX1-211ENST00000546411 CD96P40200 585 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 DHRS2Q13268 280 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 SHBQ15464 509 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 ACTBL2Q562R1 376 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 D2HGDHQ8N465 521 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 ARRDC1-AS1Q9H2J1 176 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 OBP2BQ9NPH6 170 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 PRR13Q9NZ81 148 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 ANKRD20A5PA0PJZ0 165 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 PIN1P1O15428 100 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 ZNF205O95201 554 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 RDH5Q92781 318 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 SCARF2Q96GP6 870 aaPredicted RBP13.98□□□□□ -0.17
CUX1-211ENST00000546411 C1orf123Q9NWV4 160 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 HDGFL3Q9Y3E1 203 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 TRIM64BA6NI03 449 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 MCRIP1C9JLW8 97 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 HS3ST1O14792 307 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 WNT11O96014 354 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 IFITM2Q01629 132 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 PRSS35Q8N3Z0 413 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 GALNT16Q8N428 558 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 ASB5Q8WWX0 329 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 CHST6Q9GZX3 395 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 PLA2G3Q9NZ20 509 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 WNT16Q9UBV4 365 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 LOXL2Q9Y4K0 774 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 SNRNP70P08621 437 aaKnown RBP13.98□□□□□ -0.17
CUX1-211ENST00000546411 PSMB6P28072 239 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 OR3A4PP47883 348 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 P2RX3P56373 397 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 ECH1Q13011 328 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 SP6Q3SY56 376 aa13.98□□□□□ -0.17
CUX1-211ENST00000546411 C6orf15Q6UXA7 325 aaPredicted RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms