RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 LCN10Q6JVE6 187 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 TMEM104Q8NE00 496 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 CSNK2A3Q8NEV1 391 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 SLAMF6Q96DU3 332 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 PBOV1Q9GZY1 135 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 C5orf66Q9H5L9 145 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 ELL3Q9HB65 397 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-237ENST00000539504 SLC5A6Q9Y289 635 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 PCDHGA1Q9Y5H4 931 aa10.02□□□□□ -0.81
SYNE1-237ENST00000539504 A0A1W2PP11 408 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 TCRBV21S2A2A0A5A6 115 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 SCGNO76038 276 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 SEMA4FO95754 770 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 GLRA1P23415 457 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 RABIFP47224 123 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 F2RL1P55085 397 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 FBXW4P57775 412 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 DCDP81605 110 aaKnown RBP10.01□□□□□ -0.81
SYNE1-237ENST00000539504 MST1LQ2TV78 715 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 RBMS3Q6XE24 437 aaKnown RBP10.01□□□□□ -0.81
SYNE1-237ENST00000539504 ABHD12BQ7Z5M8 362 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-237ENST00000539504 NAA40Q86UY6 237 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 OR5D18Q8NGL1 313 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 NPRL2Q8WTW4 380 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 TCTN2Q96GX1 697 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 ZC3H10Q96K80 434 aaKnown RBP10.01□□□□□ -0.81
SYNE1-237ENST00000539504 OR10C1Q96KK4 312 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 CLCC1Q96S66 551 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 C20orf24Q9BUV8 137 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 ZMAT5Q9UDW3 170 aaKnown RBP10.01□□□□□ -0.81
SYNE1-237ENST00000539504 RPH3AQ9Y2J0 694 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-237ENST00000539504 MEMO1Q9Y316 297 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 DXOO77932 396 aaKnown RBP10.01□□□□□ -0.81
SYNE1-237ENST00000539504 ACAA1P09110 424 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-237ENST00000539504 TBPP20226 339 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 TLE3Q04726 772 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 NSDHLQ15738 373 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 ANKRD55Q3KP44 614 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 RNF144BQ7Z419 303 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 PEG10Q86TG7 708 aaKnown RBP10.01□□□□□ -0.81
SYNE1-237ENST00000539504 SCGB3A2Q96PL1 93 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 TMEM59Q9BXS4 323 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 EHFQ9NZC4 300 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 COPS7AQ9UBW8 275 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 VDAC3Q9Y277 283 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 IGKV1D-43A0A0B4J1Z2 117 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 LOC390937A0A1W2PQ73 354 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 H3BML4 177 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 TXNL1O43396 289 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 TTRP02766 147 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 ISG15P05161 165 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 GFERP55789 205 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 EIF2S3LQ2VIR3 472 aaKnown RBP10.01□□□□□ -0.81
SYNE1-237ENST00000539504 Q6ZRG5 221 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 SKA3Q8IX90 412 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 ARHGEF39Q8N4T4 335 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 THAP3Q8WTV1 239 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-237ENST00000539504 CYYR1Q96J86 154 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 C2orf50Q96LR7 162 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 RAB18Q9NP72 206 aa10.01□□□□□ -0.81
SYNE1-237ENST00000539504 TRAV20A0A0B4J274 112 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 A6NIZ1 184 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 LINC00587B1AMM8 73 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 OPN1LWP04000 364 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 BCKDHBP21953 392 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 PTAFRP25105 342 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 ARL4DP49703 201 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 RAP1BP61224 184 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 RAP1AP62834 184 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 ZNF616Q08AN1 781 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 PNLIPRP3Q17RR3 467 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 DRAM2Q6UX65 266 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 GRINAQ7Z429 371 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 ST7LQ8TDW4 575 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 SECTM1Q8WVN6 248 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 TCEAL3Q969E4 200 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 FBRSQ9HAH7 460 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 GPR132Q9UNW8 380 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 LSM5Q9Y4Y9 91 aaKnown RBP10□□□□□ -0.81
SYNE1-237ENST00000539504 A0A1B0GV50 99 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 DBX1A6NMT0 343 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 ZNF878C9JN71 531 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 FABP1P07148 127 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 CHRM2P08172 466 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 ABCD3P28288 659 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 RBMXP38159 391 aaKnown RBP10□□□□□ -0.81
SYNE1-237ENST00000539504 DHPSP49366 369 aaPredicted RBP10□□□□□ -0.81
SYNE1-237ENST00000539504 IAH1Q2TAA2 248 aaPredicted RBP10□□□□□ -0.81
SYNE1-237ENST00000539504 C10orf91Q5T1B1 145 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 ADAMTS17Q8TE56 1095 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 C11orf40Q8WZ69 217 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 ISOC2Q96AB3 205 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 ARHGAP5-AS1Q96IT6 56 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 KIRREL1Q96J84 757 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 ARL5BQ96KC2 179 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 RGCCQ9H4X1 137 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 ZNF701Q9NV72 531 aaPredicted RBP10□□□□□ -0.81
SYNE1-237ENST00000539504 RP1P56715 2156 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 RTTNQ86VV8 2226 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 TRBV6-7A0A0A0MS04 114 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms