RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PRSS1P07477 247 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 AQP6Q13520 282 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 ANKRD55Q3KP44 614 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 TMEM176BQ3YBM2 270 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 C1orf220Q5T0J3 134 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 OR52E1Q8NGJ3 308 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 PHOSPHO2Q8TCD6 241 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 SLC7A10Q9NS82 523 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 CACNG4Q9UBN1 327 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 EXOGQ9Y2C4 368 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 DIP2CQ9Y2E4 1556 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 A0A0A6YYC8 382 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 PYCARD-AS1I3L0S3 204 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 I3L1I5 382 aaPredicted RBP10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 PPM1DO15297 605 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 GJB5O95377 273 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 SRSF9Q13242 221 aaKnown RBP eCLIP10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 FZD2Q14332 565 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 C1orf140Q5VVS0 124 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 SLC48A1Q6P1K1 146 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 ADAMTS17Q8TE56 1095 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 TMEM255BQ8WV15 326 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 PP6455Q8WZ26 134 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 FAM234AQ9H0X4 552 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 HINT3Q9NQE9 182 aaKnown RBP10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 OBP2AQ9NY56 170 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 FTSJ1Q9UET6 329 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 PRSS50Q9UI38 385 aa10.21□□□□□ -0.78
LIMCH1-217ENST00000512946 CTDSPLO15194 276 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 GYPAP02724 150 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 ANKRD34CP0C6C1 535 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 CD1CP29017 333 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 PITX1P78337 314 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 RBPJQ06330 500 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 EXOSC7Q15024 291 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 SMUG1Q53HV7 270 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 OR1L4Q8NGR5 311 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 ELOVL1Q9BW60 279 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 AP5S1Q9NUS5 200 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 MROH2AA6NES4 1674 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 SMAD6O43541 496 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 CRYBA1P05813 215 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 HIST1H1CP16403 213 aaKnown RBP10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 DCTDP32321 178 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 PMP22Q01453 160 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 CTBSQ01459 385 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 AMMECR1LQ6DCA0 310 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 OVCH2Q7RTZ1 564 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 RIMKLAQ8IXN7 391 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 OR5D13Q8NGL4 314 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 TMEM70Q9BUB7 260 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 APOOQ9BUR5 198 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 PKIBQ9C010 78 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 C20orf27Q9GZN8 174 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 PARP11Q9NR21 331 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 ZNF275Q9NSD4 429 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 VAX2Q9UIW0 290 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 KAT6AQ92794 2004 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 M0QZ24 198 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 SELENOFO60613 162 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 HLA-GP17693 338 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 CD82P27701 267 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 GSG1Q2KHT4 349 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 NCMAPQ5T1S8 102 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 CALHM3Q86XJ0 350 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 ARIH2OSQ8N7S6 290 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 COPS9Q8WXC6 57 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 POM121Q96HA1 1249 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 TXNDC17Q9BRA2 123 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 ZNF391Q9UJN7 358 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 PPP1R3CQ9UQK1 317 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 DCCP43146 1447 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 COL5A2P05997 1499 aaPredicted RBP10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 G3V3Y1 287 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 PRAMEF26H0Y7S4 382 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 ISLRO14498 428 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 SULT1A1P50225 295 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 MLF1P58340 268 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 AESQ08117 197 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 DUSP5Q16690 384 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 FAM78BQ5VT40 261 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 OR1L1Q8NH94 360 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 CA5BP1Q8WTZ4 195 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 EID2BQ96D98 161 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 ACY3Q96HD9 319 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 TMEM56Q96MV1 263 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 LYRM4Q9HD34 91 aa10.2□□□□□ -0.78
LIMCH1-217ENST00000512946 IQGAP1P46940 1657 aa10.19□□□□□ -0.78
LIMCH1-217ENST00000512946 PMS2P1A4D2B8 440 aa10.19□□□□□ -0.78
LIMCH1-217ENST00000512946 TMEM88BA6NKF7 163 aa10.19□□□□□ -0.78
LIMCH1-217ENST00000512946 EDN1P05305 212 aa10.19□□□□□ -0.78
LIMCH1-217ENST00000512946 CD46P15529 392 aa10.19□□□□□ -0.78
LIMCH1-217ENST00000512946 CLEC12BQ2HXU8 276 aa10.19□□□□□ -0.78
LIMCH1-217ENST00000512946 OR2B11Q5JQS5 317 aa10.19□□□□□ -0.78
LIMCH1-217ENST00000512946 DOLPP1Q86YN1 238 aa10.19□□□□□ -0.78
LIMCH1-217ENST00000512946 NLGN4XQ8N0W4 816 aa10.19□□□□□ -0.78
LIMCH1-217ENST00000512946 TMEM99Q8N816 258 aa10.19□□□□□ -0.78
LIMCH1-217ENST00000512946 OR4F17Q8NGA8 305 aa10.19□□□□□ -0.78
LIMCH1-217ENST00000512946 OR5M1Q8NGP8 315 aa10.19□□□□□ -0.78
LIMCH1-217ENST00000512946 OR2A5Q96R48 311 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms