RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 C11orf40Q8WZ69 217 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 LHX9Q9NQ69 397 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 OR14J1Q9UGF5 321 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 HDGFL3Q9Y3E1 203 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 RALGAPA2Q2PPJ7 1873 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 MCRIP1C9JLW8 97 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 TRIM77I1YAP6 450 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 IFNA5P01569 189 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 HOXB5P09067 269 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 CLDN15P56746 228 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 CLDN6P56747 220 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 UBE2MP61081 183 aaKnown RBP9.91□□□□□ -0.82
HDAC6-228ENST00000486227 CMTM1Q8IZ96 169 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 ZNF709Q8N972 641 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 LIPHQ8WWY8 451 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 DERL3Q96Q80 235 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 EGLN1Q9GZT9 426 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 KLK11Q9UBX7 282 aa9.91□□□□□ -0.82
HDAC6-228ENST00000486227 NDUFB6O95139 128 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 IFNA1P01562 189 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 IFNA10P01566 189 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 MAGEB1P43366 347 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 STARD6P59095 220 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 ACTBL2Q562R1 376 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 STPG1Q5TH74 334 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 D2HGDHQ8N465 521 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 BHLHE23Q8NDY6 225 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 ST7LQ8TDW4 575 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 WDR89Q96FK6 387 aaPredicted RBP9.9□□□□□ -0.82
HDAC6-228ENST00000486227 FAM173AQ9BQD7 235 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 NICN1Q9BSH3 213 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 UFSP2Q9NUQ7 469 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 PLA2G3Q9NZ20 509 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 HMSDA8MTL9 139 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 K7EPK0 472 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 HSPB6O14558 160 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 TNFSF11O14788 317 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 HEXAP06865 529 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 ATF1P18846 271 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 CPT2P23786 658 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 STAC2Q6ZMT1 411 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 FAM71E2Q8N5Q1 922 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 BVESQ8NE79 360 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 SCGB1C1Q8TD33 95 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 PELI1Q96FA3 418 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 GPR84Q9NQS5 396 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 CENPVL1A0A0U1RR11 272 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 RFPL4AA6NLU0 287 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 RFPL4AL1F8VTS6 287 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 BCL2L11O43521 198 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 GPANK1O95872 356 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 CRYAAP02489 173 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 CDKN2AP42771 156 aaKnown RBP9.9□□□□□ -0.82
HDAC6-228ENST00000486227 TOMM34Q15785 309 aaPredicted RBP9.9□□□□□ -0.82
HDAC6-228ENST00000486227 PLA1AQ53H76 456 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 B3GNTL1Q67FW5 361 aaPredicted RBP9.9□□□□□ -0.82
HDAC6-228ENST00000486227 DOK3Q7L591 496 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.9□□□□□ -0.82
HDAC6-228ENST00000486227 YIPF5Q969M3 257 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 RNF32Q9H0A6 362 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 OCIAD1Q9NX40 245 aa9.9□□□□□ -0.82
HDAC6-228ENST00000486227 RIF1Q5UIP0 2472 aaKnown RBP9.9□□□□□ -0.83
HDAC6-228ENST00000486227 SERPINE2P07093 398 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 CCL4P13236 92 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 NAGAP17050 411 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 FMODQ06828 376 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 ZNF766Q5HY98 468 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 C1QL3Q5VWW1 255 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 TMEM65Q6PI78 240 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 ZNF695Q8IW36 515 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 ROBO4Q8WZ75 1007 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 PSMF1Q92530 271 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 HGDQ93099 445 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 RNF170Q96K19 258 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 SMIM3Q9BZL3 60 aa9.9□□□□□ -0.83
HDAC6-228ENST00000486227 M0R135 149 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 CCSO14618 274 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 SERPINA7P05543 415 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 CDAP32320 146 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 EIF2S3P41091 472 aaKnown RBP9.89□□□□□ -0.83
HDAC6-228ENST00000486227 ALDH3B1P43353 468 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 CAV2P51636 162 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 DOC2BQ14184 412 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 GAB4Q2WGN9 574 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 DMRTC1Q5HYR2 192 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 ACER2Q5QJU3 275 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 SLC25A30Q5SVS4 291 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 RTL6Q6ICC9 239 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 WDR74Q6RFH5 385 aaPredicted RBP9.89□□□□□ -0.83
HDAC6-228ENST00000486227 VASH2Q86V25 355 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 GABRG1Q8N1C3 465 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 ZNF799Q96GE5 643 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 GPA33Q99795 319 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 GPR87Q9BY21 358 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 EXOGQ9Y2C4 368 aaKnown RBP9.89□□□□□ -0.83
HDAC6-228ENST00000486227 DTX4Q9Y2E6 619 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 NCOR1O75376 2440 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 TRGV5A0A0B4J1U4 118 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 SLC22A20A6NK97 555 aa9.89□□□□□ -0.83
HDAC6-228ENST00000486227 LINC01387J3KSC0 135 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms