RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 ZNF829Q3KNS6 432 aaPredicted RBP1.96□□□□□ -2.1
USP40-209ENST00000452724 SLC25A35Q3KQZ1 300 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 GUSBP11Q6P575 273 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 SPINT4Q6UDR6 99 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 MDP1Q86V88 176 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 SLC35G3Q8N808 338 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 UBAC2Q8NBM4 344 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 GHSRQ92847 366 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 RPEQ96AT9 228 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 SGTBQ96EQ0 304 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 TOLLIPQ9H0E2 274 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 RRAGDQ9NQL2 400 aaPredicted RBP1.96□□□□□ -2.1
USP40-209ENST00000452724 DHCR7Q9UBM7 475 aaKnown RBP1.96□□□□□ -2.1
USP40-209ENST00000452724 SAR1BQ9Y6B6 198 aa1.96□□□□□ -2.1
USP40-209ENST00000452724 IGKV1-27A0A075B6S5 117 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 KCNE1BA0A087WTH5 132 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 TRIM64CA6NLI5 447 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 HLA-HP01893 362 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 MT-ND4P03905 459 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 GLAP06280 429 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 MYL9P24844 172 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 BMI1P35226 326 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 PPICP45877 212 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 GDI2P50395 445 aaKnown RBP1.95□□□□□ -2.1
USP40-209ENST00000452724 RAB9AP51151 201 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 ILKQ13418 452 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 TRMT5Q32P41 509 aaKnown RBP1.95□□□□□ -2.1
USP40-209ENST00000452724 TMEM53Q6P2H8 277 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 CASP12Q6UXS9 341 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 ERO1BQ86YB8 467 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 PQLC3Q8N755 202 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 BPIFCQ8NFQ6 507 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 CCDC148Q8NFR7 591 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 OR10W1Q8NGF6 305 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 OR56A4Q8NGH8 313 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 OR52E5Q8NH55 327 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 KLF14Q8TD94 323 aaPredicted RBP1.95□□□□□ -2.1
USP40-209ENST00000452724 RXFP4Q8TDU9 374 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 CPNE4Q96A23 557 aaPredicted RBP1.95□□□□□ -2.1
USP40-209ENST00000452724 WDR34Q96EX3 536 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 KCNS1Q96KK3 526 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 MYCBPQ99417 103 aaPredicted RBP1.95□□□□□ -2.1
USP40-209ENST00000452724 C11orf70Q9BRQ4 267 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 UQCC2Q9BRT2 126 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 CALN1Q9BXU9 219 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 HES2Q9Y543 173 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 COMMD3-BMI1R4GMX3 469 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 INSRP06213 1382 aa1.95□□□□□ -2.1
USP40-209ENST00000452724 SHANK1Q9Y566 2161 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 ANKRD65E5RJM6 399 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 TEX46H3BTG2 121 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 CACNG3O60359 315 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 GATBO75879 557 aaKnown RBP1.94□□□□□ -2.1
USP40-209ENST00000452724 LHBP01229 141 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 UBE2E1P51965 193 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 UBE2MP61081 183 aaKnown RBP1.94□□□□□ -2.1
USP40-209ENST00000452724 FLI1Q01543 452 aaPredicted RBP1.94□□□□□ -2.1
USP40-209ENST00000452724 IL15RAQ13261 267 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 STUMQ69YW2 141 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 VKORC1L1Q8N0U8 176 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 OR5M1Q8NGP8 315 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 OR1P1Q8NH06 330 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 RERGQ96A58 199 aaPredicted RBP1.94□□□□□ -2.1
USP40-209ENST00000452724 DYNLL2Q96FJ2 89 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 C18orf15Q96N68 181 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 KCNS3Q9BQ31 491 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 RHOXF2Q9BQY4 288 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 NUDT9Q9BW91 350 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 PIGUQ9H490 435 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 DHX35Q9H5Z1 703 aaKnown RBP1.94□□□□□ -2.1
USP40-209ENST00000452724 ZNF442Q9H7R0 627 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 UBIAD1Q9Y5Z9 338 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 TSPOAP1O95153 1857 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 ADGRL1O94910 1474 aa1.94□□□□□ -2.1
USP40-209ENST00000452724 IGKV3D-11A0A0A0MRZ8 115 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 VGLL3A8MV65 326 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 C16orf90A8MZG2 172 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 BCKDKO14874 412 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 SLC16A7O60669 478 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 FCN3O75636 299 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 TGM6O95932 706 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 IFNW1P05000 195 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 HSPD1P10809 573 aaKnown RBP1.93□□□□□ -2.1
USP40-209ENST00000452724 TCP1P17987 556 aaKnown RBP1.93□□□□□ -2.1
USP40-209ENST00000452724 GGT2P36268 569 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 MYCNOSP40205 109 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 NBL1P41271 181 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 SLC1A2P43004 574 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 SERPINB8P50452 374 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 RBX1P62877 108 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 IFITM3Q01628 133 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 ITIH4Q14624 930 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 OPN5Q6U736 354 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 CD300LGQ6UXG3 332 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 BRD3OSQ6XYD6 125 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 TMPRSS11AQ6ZMR5 421 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 TMEM104Q8NE00 496 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 OR5AR1Q8NGP9 310 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 OR1L1Q8NH94 360 aa1.93□□□□□ -2.1
USP40-209ENST00000452724 RAB1CQ92928 201 aa1.93□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms