RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SIAH2O43255 324 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 ITM2AO43736 263 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 PTGFRP43088 359 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 TFPI2P48307 235 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 BBS1Q8NFJ9 593 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 VSTM2AQ8TAG5 236 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 TFAP2CQ92754 450 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 IL36GQ9NZH8 169 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 CACFD1Q9UGQ2 172 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 ARPC3O15145 178 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 ETHE1O95571 254 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 PNPP00491 289 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 ADRA2CP18825 462 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 GPR141Q7Z602 305 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 PRRC1Q96M27 445 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 ANGPTL4Q9BY76 406 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 SEMA6AQ9H2E6 1030 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 NDUFAF4Q9P032 175 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 COA3Q9Y2R0 106 aaPredicted RBP7.43□□□□□ -1.22
HMGB1-203ENST00000341423 TRAV27A0A087WT01 109 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 RAB27BO00194 218 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 SNCGO76070 127 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 GLI4P10075 376 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 PAX6P26367 422 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 LCN6P62502 163 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 GGTA1PQ4G0N0 100 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 PYDC2Q56P42 97 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 OR13C9Q8NGT0 318 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 OR5K1Q8NHB7 308 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 SLAMF9Q96A28 289 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 OLFM3Q96PB7 478 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 UQCC2Q9BRT2 126 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 SH2B3Q9UQQ2 575 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 SPEF2Q9C093 1822 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 MTORP42345 2549 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 BAZ2AQ9UIF9 1905 aaKnown RBP7.43□□□□□ -1.22
HMGB1-203ENST00000341423 KIAA1324LA8MWY0 1029 aaPredicted RBP7.43□□□□□ -1.22
HMGB1-203ENST00000341423 J3QLI3 93 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 ENTPD6O75354 484 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF32P17041 273 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 PGFP49763 221 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 FBXW12Q6X9E4 464 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 MDP1Q86V88 176 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 HS3ST5Q8IZT8 346 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 LKAAEAR1Q8TD35 194 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 ERGIC1Q969X5 290 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 MOB1AQ9H8S9 216 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 C8orf4Q9NR00 106 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 MPC1Q9Y5U8 109 aa7.43□□□□□ -1.22
HMGB1-203ENST00000341423 RGPD3A6NKT7 1758 aaPredicted RBP7.43□□□□□ -1.22
HMGB1-203ENST00000341423 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 H7C1C5 153 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF26P17031 533 aaPredicted RBP7.42□□□□□ -1.22
HMGB1-203ENST00000341423 PRR30Q53SZ7 412 aaPredicted RBP7.42□□□□□ -1.22
HMGB1-203ENST00000341423 UNQ5815/PRO19632Q6UWF5 114 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 LHFPL2Q6ZUX7 228 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 NOXO1Q8NFA2 376 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 TLCD1Q96CP7 247 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 MSL2Q9HCI7 577 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 NOTCH3Q9UM47 2321 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 NPBWR1P48145 328 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 S100A10P60903 97 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 Q6ZT83 130 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 DCXRQ7Z4W1 244 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 RNF128Q8TEB7 428 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 GATA6Q92908 595 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 PYURFQ96I23 114 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 AKIRIN1Q9H9L7 192 aaPredicted RBP7.42□□□□□ -1.22
HMGB1-203ENST00000341423 DOCK2Q92608 1830 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 A0A1W2PN81 502 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 MAS1P04201 325 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 CTXN2P0C2S0 81 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 EGR1P18146 543 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 CHRNA7P36544 502 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 OR10A3P58181 314 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 RPS26P11Q5JNZ5 115 aaPredicted RBP7.42□□□□□ -1.22
HMGB1-203ENST00000341423 CLVS2Q5SYC1 327 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 OR10J5Q8NHC4 309 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 GPR173Q9NS66 373 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 SLCO1B1Q9Y6L6 691 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 ZFYVE26Q68DK2 2539 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 TCRBV7S2A1N4TA0A589 114 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 OR5B21A6NL26 309 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 CYR61O00622 381 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 HRASP01112 189 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 C1QTNF12Q5T7M4 302 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 LPCAT3Q6P1A2 487 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 C10orf82Q8WW14 230 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 GALMQ96C23 342 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 SPSB2Q99619 263 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 VGLL1Q99990 258 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 CNTD2Q9H8S5 307 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 PEX16Q9Y5Y5 336 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 EVPLQ92817 2033 aa7.42□□□□□ -1.22
HMGB1-203ENST00000341423 GPR37O15354 613 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 RBP4P02753 201 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 CRMP1Q14194 572 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 SLC9A3R2Q15599 337 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 SYPL1Q16563 259 aa7.41□□□□□ -1.22
HMGB1-203ENST00000341423 PELI3Q8N2H9 469 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms