RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 GUSBP08236 651 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 RPL24P83731 157 aaKnown RBP12.6□□□□□ -0.39
CSPG4-201ENST00000308508 MLF2Q15773 248 aaPredicted RBP12.6□□□□□ -0.39
CSPG4-201ENST00000308508 NKAIN4Q8IVV8 208 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 PHYHIPLQ96FC7 376 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 PRR14Q9BWN1 585 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 HINT3Q9NQE9 182 aaKnown RBP12.6□□□□□ -0.39
CSPG4-201ENST00000308508 OR1A1Q9P1Q5 309 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 POM121BA6NF01 834 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 FZD9O00144 591 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 PSMB2P49721 201 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 OR2M3Q8NG83 312 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 OR10C1Q96KK4 312 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 OCEL1Q9H607 264 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 M0R135 149 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 FCN1O00602 326 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 XRCC2O43543 280 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 PMP22Q01453 160 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 GLCCI1Q86VQ1 547 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 NUDCD2Q8WVJ2 157 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 ZNF799Q96GE5 643 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 FAM210BQ96KR6 192 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 C12orf49Q9H741 205 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 AUNIPQ9H7T9 357 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 HS3ST2Q9Y278 367 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 TRAV34A0A0B4J273 112 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 EPXP11678 715 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 HOXD9P28356 352 aaPredicted RBP12.6□□□□□ -0.39
CSPG4-201ENST00000308508 LIM2P55344 173 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 CDK5R1Q15078 307 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 ELOBQ15370 118 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 NTNG2Q96CW9 530 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 POM121L2Q96KW2 1035 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 EDN1P05305 212 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 SMIM6P0DI80 62 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 PI3P19957 117 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 RPS16P62249 146 aaKnown RBP12.6□□□□□ -0.39
CSPG4-201ENST00000308508 DUSP8Q13202 625 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 OR5AS1Q8N127 324 aa12.6□□□□□ -0.39
CSPG4-201ENST00000308508 A0A1B0GTW7 788 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 OR6S1Q8NH40 331 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 ADGRG7Q96K78 797 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 S1PR5Q9H228 398 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 CDK5RAP2Q96SN8 1893 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 C4AP0C0L4 1744 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 C4BP0C0L5 1744 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 TLCD2A6NGC4 264 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 M0R082 166 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 WSB1Q9Y6I7 421 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 PMS2P1A4D2B8 440 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 PRKRAO75569 313 aaKnown RBP12.59□□□□□ -0.39
CSPG4-201ENST00000308508 GYPAP02724 150 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 AGFG1P52594 562 aaKnown RBP12.59□□□□□ -0.39
CSPG4-201ENST00000308508 EIF4E3Q8N5X7 224 aaKnown RBP12.59□□□□□ -0.39
CSPG4-201ENST00000308508 TMEM40Q8WWA1 233 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 TMEM230Q96A57 120 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 GALMQ96C23 342 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 LRFN3Q9BTN0 628 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 NWD2Q9ULI1 1742 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 SH2D7A6NKC9 451 aaPredicted RBP12.59□□□□□ -0.39
CSPG4-201ENST00000308508 RGRP47804 291 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 DUSP5Q16690 384 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 ACSM5Q6NUN0 579 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 ARRDC1Q8N5I2 433 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 HCFC1R1Q9NWW0 138 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 MIA3Q5JRA6 1907 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 PLPP1O14494 284 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 PTHLHP12272 177 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 BMI1P35226 326 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 CD200P41217 278 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 CYB561P49447 251 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 FOXB2Q5VYV0 432 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 ARIH2OSQ8N7S6 290 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 PRSS3P2Q8NHM4 247 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 SIRPB1O00241 398 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 LY86O95711 162 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 RPLP1P05386 114 aaKnown RBP12.59□□□□□ -0.39
CSPG4-201ENST00000308508 GLRA1P23415 457 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 BCL6P41182 706 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 ZDHHC22Q8N966 263 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 GPR137Q96N19 417 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 M0R1X1 148 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 MBTPS2O43462 519 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 OR5D13Q8NGL4 314 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 OR2G2Q8NGZ5 317 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 EDEM2Q9BV94 578 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 SEC11CQ9BY50 192 aa12.59□□□□□ -0.39
CSPG4-201ENST00000308508 RP1P56715 2156 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 FFAR4Q5NUL3 377 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 LRP11Q86VZ4 500 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 BATF2Q8N1L9 274 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 EXTL1Q92935 676 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 A6NDN8 102 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 CYBAP13498 195 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 FAM3AP98173 230 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF628Q5EBL2 1059 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 ASTLQ6HA08 431 aaPredicted RBP12.58□□□□□ -0.4
CSPG4-201ENST00000308508 PDXPQ96GD0 296 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 HDAC8Q9BY41 377 aa12.58□□□□□ -0.4
CSPG4-201ENST00000308508 C5orf52A6NGY3 159 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms