RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 OR51A2Q8NGJ7 313 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 PHYHIPQ92561 330 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 TCF7L1Q9HCS4 588 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 ZNF275Q9NSD4 429 aaPredicted RBP17.47■□□□□ 0.39
CLN3-250ENST00000636839 DAPK2Q9UIK4 370 aa17.47■□□□□ 0.39
CLN3-250ENST00000636839 PCNX1Q96RV3 2341 aa17.46■□□□□ 0.39
CLN3-250ENST00000636839 TRGV8A0A0C4DH27 118 aa17.46■□□□□ 0.39
CLN3-250ENST00000636839 UBL3O95164 117 aa17.46■□□□□ 0.39
CLN3-250ENST00000636839 MAPK3P27361 379 aaPredicted RBP17.46■□□□□ 0.39
CLN3-250ENST00000636839 RBPJQ06330 500 aa17.46■□□□□ 0.39
CLN3-250ENST00000636839 TMEM53Q6P2H8 277 aa17.46■□□□□ 0.39
CLN3-250ENST00000636839 SFXN4Q6P4A7 337 aa17.46■□□□□ 0.39
CLN3-250ENST00000636839 TPRA1Q86W33 373 aa17.46■□□□□ 0.39
CLN3-250ENST00000636839 WACQ9BTA9 647 aa17.46■□□□□ 0.39
CLN3-250ENST00000636839 SFXN3Q9BWM7 321 aa17.46■□□□□ 0.39
CLN3-250ENST00000636839 SMURF1Q9HCE7 757 aa17.46■□□□□ 0.39
CLN3-250ENST00000636839 USP24Q9UPU5 2620 aa17.46■□□□□ 0.39
CLN3-250ENST00000636839 A0A1B0GVI7 797 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 BMP4P12644 408 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 ATF1P18846 271 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 THBS2P35442 1172 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 POM121L2Q96KW2 1035 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 ZFP3Q96NJ6 502 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 EEF1E1-BLOC1S5C9J1V9 151 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 EEF1E1O43324 174 aaKnown RBP17.45■□□□□ 0.38
CLN3-250ENST00000636839 PAHP00439 452 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 IGLV3-1P01715 115 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 RAF1P04049 648 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 SFTPCP11686 197 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 UBE2NP61088 152 aaKnown RBP17.45■□□□□ 0.38
CLN3-250ENST00000636839 LAX1Q8IWV1 398 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 COMMD3Q9UBI1 195 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 POLEQ07864 2286 aa17.45■□□□□ 0.38
CLN3-250ENST00000636839 RGS5O15539 181 aa17.44■□□□□ 0.38
CLN3-250ENST00000636839 NGFP01138 241 aa17.44■□□□□ 0.38
CLN3-250ENST00000636839 EPXP11678 715 aa17.44■□□□□ 0.38
CLN3-250ENST00000636839 MADCAM1Q13477 382 aa17.44■□□□□ 0.38
CLN3-250ENST00000636839 GLYATL3Q5SZD4 288 aa17.44■□□□□ 0.38
CLN3-250ENST00000636839 HES5Q5TA89 166 aa17.44■□□□□ 0.38
CLN3-250ENST00000636839 BEND4Q6ZU67 534 aa17.44■□□□□ 0.38
CLN3-250ENST00000636839 MIXL1Q9H2W2 232 aa17.44■□□□□ 0.38
CLN3-250ENST00000636839 ABCB9Q9NP78 766 aa17.44■□□□□ 0.38
CLN3-250ENST00000636839 A0A075B6Q4 140 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 IQCMA0A1B0GVH7 501 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 APOC1P02654 83 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 CCL1P22362 96 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 IDH3GP51553 393 aaPredicted RBP17.43■□□□□ 0.38
CLN3-250ENST00000636839 CLDN12P56749 244 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 PLP2Q04941 152 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 FAM27E3Q08E93 113 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 MRPL49Q13405 166 aaKnown RBP17.43■□□□□ 0.38
CLN3-250ENST00000636839 P2RY6Q15077 328 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 MOGQ16653 247 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 EIF2S3LQ2VIR3 472 aaKnown RBP17.43■□□□□ 0.38
CLN3-250ENST00000636839 BHLHA15Q7RTS1 189 aaPredicted RBP17.43■□□□□ 0.38
CLN3-250ENST00000636839 OR14K1Q8NGZ2 314 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 CNTNAP3BQ96NU0 1288 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 CNTNAP3Q9BZ76 1288 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 OR10A2Q9H208 303 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 OR51B6Q9H340 312 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 OSGIN2Q9Y236 505 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 A3GALT2U3KPV4 340 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 A0A0U1RQV5 110 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 A8MXE2 369 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 SERPINA5P05154 406 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 ZNF14P17017 642 aaPredicted RBP17.43■□□□□ 0.38
CLN3-250ENST00000636839 IGFBP3P17936 291 aaPredicted RBP17.43■□□□□ 0.38
CLN3-250ENST00000636839 GNALP38405 381 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 ZNF92Q03936 586 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 SPOCK1Q08629 439 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 RNF144BQ7Z419 303 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 ZNF101Q8IZC7 436 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 PLPP7Q8NBV4 271 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 ST6GALNAC3Q8NDV1 305 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 OR52H1Q8NGJ2 320 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 NANOS1Q8WY41 292 aaKnown RBP17.43■□□□□ 0.38
CLN3-250ENST00000636839 REEP6Q96HR9 211 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 AKIP1Q9NQ31 210 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 MYO7BQ6PIF6 2116 aa17.43■□□□□ 0.38
CLN3-250ENST00000636839 NOTOA8MTQ0 251 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 J3QRK9 145 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 CD2P06729 351 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 WNT5AP41221 380 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 TNK1Q13470 666 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 ALKBH2Q6NS38 261 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 DOK3Q7L591 496 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 MFSD4AQ8N468 514 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 RELL2Q8NC24 303 aaPredicted RBP17.42■□□□□ 0.38
CLN3-250ENST00000636839 DMRTA2Q96SC8 542 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 C1QTNF5Q9BXJ0 243 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 ZCCHC4Q9H5U6 513 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 CACNA1BQ00975 2339 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 HPGDSO60760 199 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 COX5BP10606 129 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 SNRPBP14678 240 aaKnown RBP17.42■□□□□ 0.38
CLN3-250ENST00000636839 ACKR3P25106 362 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 TNFSF8P32971 234 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 OPRM1P35372 400 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 COLCA1Q6ZS62 124 aa17.42■□□□□ 0.38
CLN3-250ENST00000636839 C22orf34Q6ZV56 151 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms