RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 CCNOP22674 350 aa19.36■□□□□ 0.69
ATG4D-209ENST00000588857 APLNRP35414 380 aa19.36■□□□□ 0.69
ATG4D-209ENST00000588857 GFOD2Q3B7J2 385 aa19.36■□□□□ 0.69
ATG4D-209ENST00000588857 STAC2Q6ZMT1 411 aa19.36■□□□□ 0.69
ATG4D-209ENST00000588857 KCNS3Q9BQ31 491 aa19.36■□□□□ 0.69
ATG4D-209ENST00000588857 CCDC59Q9P031 241 aaKnown RBP19.36■□□□□ 0.69
ATG4D-209ENST00000588857 ZNF319Q9P2F9 582 aa19.36■□□□□ 0.69
ATG4D-209ENST00000588857 TRAV1-2A0A0B4J238 106 aa19.35■□□□□ 0.69
ATG4D-209ENST00000588857 A0A0U1RQV5 110 aa19.35■□□□□ 0.69
ATG4D-209ENST00000588857 RORCP51449 518 aa19.35■□□□□ 0.69
ATG4D-209ENST00000588857 TPRA1Q86W33 373 aa19.35■□□□□ 0.69
ATG4D-209ENST00000588857 WDR31Q8NA23 367 aa19.35■□□□□ 0.69
ATG4D-209ENST00000588857 ASB5Q8WWX0 329 aa19.35■□□□□ 0.69
ATG4D-209ENST00000588857 TSC22D3Q99576 134 aa19.35■□□□□ 0.69
ATG4D-209ENST00000588857 SLITRK2Q9H156 845 aa19.35■□□□□ 0.69
ATG4D-209ENST00000588857 GPR84Q9NQS5 396 aa19.35■□□□□ 0.69
ATG4D-209ENST00000588857 OR5H1A6NKK0 313 aa19.34■□□□□ 0.69
ATG4D-209ENST00000588857 CLEC2LP0C7M8 214 aa19.34■□□□□ 0.69
ATG4D-209ENST00000588857 SRMP19623 302 aa19.34■□□□□ 0.69
ATG4D-209ENST00000588857 PSMB1P20618 241 aaKnown RBP19.34■□□□□ 0.69
ATG4D-209ENST00000588857 HGFACQ04756 655 aa19.34■□□□□ 0.69
ATG4D-209ENST00000588857 MRPL49Q13405 166 aaKnown RBP19.34■□□□□ 0.69
ATG4D-209ENST00000588857 LIX1LQ8IVB5 337 aa19.34■□□□□ 0.69
ATG4D-209ENST00000588857 ZNF584Q8IVC4 421 aa19.34■□□□□ 0.69
ATG4D-209ENST00000588857 SLC25A46Q96AG3 418 aa19.34■□□□□ 0.69
ATG4D-209ENST00000588857 POM121L2Q96KW2 1035 aa19.34■□□□□ 0.69
ATG4D-209ENST00000588857 ELOVL5Q9NYP7 299 aa19.34■□□□□ 0.69
ATG4D-209ENST00000588857 AMDHD2Q9Y303 409 aa19.34■□□□□ 0.69
ATG4D-209ENST00000588857 UBR5O95071 2799 aaPredicted RBP19.34■□□□□ 0.69
ATG4D-209ENST00000588857 TRBV5-7A0A0A0MS05 114 aa19.33■□□□□ 0.69
ATG4D-209ENST00000588857 A0A1B0GTI1 187 aa19.33■□□□□ 0.69
ATG4D-209ENST00000588857 SHISA3A0PJX4 238 aa19.33■□□□□ 0.69
ATG4D-209ENST00000588857 PIN1P1O15428 100 aa19.33■□□□□ 0.69
ATG4D-209ENST00000588857 CCL2P13500 99 aa19.33■□□□□ 0.69
ATG4D-209ENST00000588857 SNAI3Q3KNW1 292 aa19.33■□□□□ 0.69
ATG4D-209ENST00000588857 DOK3Q7L591 496 aa19.33■□□□□ 0.69
ATG4D-209ENST00000588857 RELL2Q8NC24 303 aaPredicted RBP19.33■□□□□ 0.69
ATG4D-209ENST00000588857 SLC30A7Q8NEW0 376 aa19.33■□□□□ 0.69
ATG4D-209ENST00000588857 MS4A3Q96HJ5 214 aa19.33■□□□□ 0.69
ATG4D-209ENST00000588857 ZNF75AQ96N20 296 aa19.33■□□□□ 0.69
ATG4D-209ENST00000588857 TCF7L1Q9HCS4 588 aa19.33■□□□□ 0.69
ATG4D-209ENST00000588857 CBR1P16152 277 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 ZNF12P17014 697 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 ZNF14P17017 642 aaPredicted RBP19.32■□□□□ 0.68
ATG4D-209ENST00000588857 GNLYP22749 145 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 ANOS1P23352 680 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 TBC1D28Q2M2D7 210 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 STEAP2Q8NFT2 490 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 ORAI1Q96D31 301 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 FAM71F1Q96KD3 344 aaPredicted RBP19.32■□□□□ 0.68
ATG4D-209ENST00000588857 C1QTNF5Q9BXJ0 243 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 SLIRPQ9GZT3 109 aaKnown RBP19.32■□□□□ 0.68
ATG4D-209ENST00000588857 JKAMPQ9P055 326 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 CKLFQ9UBR5 152 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 SMIM30A4D0T7 59 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 C5orf63A6NC05 138 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 CCL1P22362 96 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 IDH3GP51553 393 aaPredicted RBP19.32■□□□□ 0.68
ATG4D-209ENST00000588857 HNRNPA0Q13151 305 aaKnown RBP19.32■□□□□ 0.68
ATG4D-209ENST00000588857 TIMM23BQ5SRD1 257 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 OR1J2Q8NGS2 313 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 S100PBPQ96BU1 408 aa19.32■□□□□ 0.68
ATG4D-209ENST00000588857 MOV10Q9HCE1 1003 aaKnown RBP19.32■□□□□ 0.68
ATG4D-209ENST00000588857 ZNF275Q9NSD4 429 aaPredicted RBP19.32■□□□□ 0.68
ATG4D-209ENST00000588857 CLPXO76031 633 aa19.31■□□□□ 0.68
ATG4D-209ENST00000588857 AGFG2O95081 481 aa19.31■□□□□ 0.68
ATG4D-209ENST00000588857 RAB3BP20337 219 aa19.31■□□□□ 0.68
ATG4D-209ENST00000588857 UQCRFS1P47985 274 aa19.31■□□□□ 0.68
ATG4D-209ENST00000588857 FAM27E3Q08E93 113 aa19.31■□□□□ 0.68
ATG4D-209ENST00000588857 ESPL1Q14674 2120 aa19.31■□□□□ 0.68
ATG4D-209ENST00000588857 ZNF404Q494X3 552 aa19.31■□□□□ 0.68
ATG4D-209ENST00000588857 MCFD2Q8NI22 146 aa19.31■□□□□ 0.68
ATG4D-209ENST00000588857 SGK3Q96BR1 496 aa19.31■□□□□ 0.68
ATG4D-209ENST00000588857 C1QTNF6Q9BXI9 259 aa19.31■□□□□ 0.68
ATG4D-209ENST00000588857 RGCCQ9H4X1 137 aa19.31■□□□□ 0.68
ATG4D-209ENST00000588857 ZNF391Q9UJN7 358 aa19.31■□□□□ 0.68
ATG4D-209ENST00000588857 PDCD5O14737 125 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 MTRF1O75570 445 aaKnown RBP19.3■□□□□ 0.68
ATG4D-209ENST00000588857 NCR1O76036 304 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 IGLV3-1P01715 115 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 COLCA1Q6ZS62 124 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 FJX1Q86VR8 437 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 CCDC54Q8NEL0 328 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 APOBEC3DQ96AK3 386 aaPredicted RBP19.3■□□□□ 0.68
ATG4D-209ENST00000588857 FGGYQ96C11 551 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 MUCL1Q96DR8 90 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 REEP6Q96HR9 211 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 LYZL4Q96KX0 146 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 USB1Q9BQ65 265 aaKnown RBP19.3■□□□□ 0.68
ATG4D-209ENST00000588857 BARHL1Q9BZE3 327 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 ACTR6Q9GZN1 396 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 COQ3Q9NZJ6 369 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 PMF1-BGLAPU3KQ54 211 aa19.3■□□□□ 0.68
ATG4D-209ENST00000588857 ANKRD61A6NGH8 418 aa19.29■□□□□ 0.68
ATG4D-209ENST00000588857 XRCC2O43543 280 aa19.29■□□□□ 0.68
ATG4D-209ENST00000588857 IGKV3-15P01624 115 aa19.29■□□□□ 0.68
ATG4D-209ENST00000588857 CELA3BP08861 270 aa19.29■□□□□ 0.68
ATG4D-209ENST00000588857 ZNF20P17024 532 aa19.29■□□□□ 0.68
ATG4D-209ENST00000588857 CAV3P56539 151 aa19.29■□□□□ 0.68
ATG4D-209ENST00000588857 GLYATL3Q5SZD4 288 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms