RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 LCATP04180 440 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 DBHP09172 617 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 OCM2P0CE71 109 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 GNLYP22749 145 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 MALLQ13021 153 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 SOWAHCQ53LP3 525 aaPredicted RBP13.25□□□□□ -0.29
SS18-215ENST00000580642 PRR7Q8TB68 274 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 RGP1Q92546 391 aaPredicted RBP13.25□□□□□ -0.29
SS18-215ENST00000580642 RPL3LQ92901 407 aaKnown RBP13.25□□□□□ -0.29
SS18-215ENST00000580642 CENPOQ9BU64 300 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 CDH20Q9HBT6 801 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 SLC24A3Q9HC58 644 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 KCNJ16Q9NPI9 418 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 DHDHQ9UQ10 334 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 CACNA1CQ13936 2221 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 IGSF10Q6WRI0 2623 aa13.25□□□□□ -0.29
SS18-215ENST00000580642 A0A1B0GTI1 187 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 EPXP11678 715 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 MYL9P24844 172 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 RANBP1P43487 201 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 IDH3GP51553 393 aaPredicted RBP13.24□□□□□ -0.29
SS18-215ENST00000580642 PSMD7P51665 324 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 TSC22D1Q15714 1073 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 TAB1Q15750 504 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 HSD17B12Q53GQ0 312 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 ZBTB37Q5TC79 503 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 C22orf42Q6IC83 251 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 SEZ6L2Q6UXD5 910 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 NCCRP1Q6ZVX7 275 aaPredicted RBP13.24□□□□□ -0.29
SS18-215ENST00000580642 CROCCP3Q8IVE0 287 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 PARP16Q8N5Y8 322 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 SLC7A6Q92536 515 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 DERL3Q96Q80 235 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 KCNS3Q9BQ31 491 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 SLITRK2Q9H156 845 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 BRD7Q9NPI1 651 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 ZNF275Q9NSD4 429 aaPredicted RBP13.24□□□□□ -0.29
SS18-215ENST00000580642 CKLFQ9UBR5 152 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 FOXJ3Q9UPW0 622 aa13.24□□□□□ -0.29
SS18-215ENST00000580642 DHRS3O75911 302 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 ALX3O95076 343 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 ZNF35P13682 527 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 FSTP19883 344 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 CCKARP32238 428 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 DDOSTP39656 456 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 RAD52P43351 418 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 VBP1P61758 197 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 NCS1P62166 190 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 KRT74Q7RTS7 529 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 OR51E1Q8TCB6 317 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 TSEN15Q8WW01 171 aaKnown RBP13.23□□□□□ -0.29
SS18-215ENST00000580642 TMEM106AQ96A25 262 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 SGK3Q96BR1 496 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 TRMT61AQ96FX7 289 aaKnown RBP13.23□□□□□ -0.29
SS18-215ENST00000580642 DACH2Q96NX9 599 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 OR14A2Q96R54 314 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 BCL2L14Q9BZR8 327 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 DCSTAMPQ9H295 470 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 GPR84Q9NQS5 396 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 SNTG1Q9NSN8 517 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 PTTG2Q9NZH5 202 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 ZNF319Q9P2F9 582 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 NDRG3Q9UGV2 375 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 SPEF1Q9Y4P9 236 aa13.23□□□□□ -0.29
SS18-215ENST00000580642 NBEAQ8NFP9 2946 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 IGHV1-18A0A0C4DH31 117 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 MEGF11A6BM72 1044 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 P2RY10O00398 339 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 PDCD5O14737 125 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 TBX1O43435 398 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 ATE1O95260 518 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 CECR9P0C854 216 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 SLC2A1P11166 492 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 PTAFRP25105 342 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 HGFACQ04756 655 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 IGFBP7Q16270 282 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 CNPY1Q3B7I2 92 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 SNAI3Q3KNW1 292 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 LINC00299Q6ZSB3 139 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 PGAP1Q75T13 922 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 NAA40Q86UY6 237 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 SERPINA12Q8IW75 414 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 RDH10Q8IZV5 341 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 OR13C3Q8NGS6 347 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 PP6455Q8WZ26 134 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 PPP1R14AQ96A00 147 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 MS4A3Q96HJ5 214 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 CCDC59Q9P031 241 aaKnown RBP13.22□□□□□ -0.29
SS18-215ENST00000580642 A3GALT2U3KPV4 340 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 V9GYS6 101 aa13.22□□□□□ -0.29
SS18-215ENST00000580642 ANKRD61A6NGH8 418 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 CLDN14O95500 239 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 CRYAAP02489 173 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 SRMP19623 302 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 CCNOP22674 350 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 NR4A1P22736 598 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 CALRP27797 417 aaKnown RBP13.21□□□□□ -0.29
SS18-215ENST00000580642 SOX6P35712 828 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 MAP2K3P46734 347 aa13.21□□□□□ -0.29
SS18-215ENST00000580642 SERPINB10P48595 397 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms