RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 XRCC3O43542 346 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 APOC1P02654 83 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 ABOP16442 354 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 ZNF32P17041 273 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 SLC6A1P30531 599 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 ECH1Q13011 328 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 RNPS1Q15287 305 aaKnown RBP18.14■□□□□ 0.49
VPS28-209ENST00000528142 STK11Q15831 433 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 KRTAP27-1Q3LI81 207 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 AGAP6Q5VW22 663 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 MTFR2Q6P444 385 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 COMMD2Q86X83 199 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 TOMM5Q8N4H5 51 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 JAGN1Q8N5M9 183 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 OR52N4Q8NGI2 321 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 SPTSSAQ969W0 71 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 ZNF799Q96GE5 643 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 FAM71F1Q96KD3 344 aaPredicted RBP18.14■□□□□ 0.49
VPS28-209ENST00000528142 EXO5Q9H790 373 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 NLKQ9UBE8 527 aa18.14■□□□□ 0.49
VPS28-209ENST00000528142 OR6C6A6NF89 314 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 ORC5O43913 435 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 IGHV3-9P01782 118 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 YES1P07947 543 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 ZNF20P17024 532 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 RAB3AP20336 220 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 BTCP35070 178 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 SLC6A9P48067 706 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 ZNF774Q6NX45 483 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 PLET1Q6UQ28 207 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 DNM1P46Q6ZS02 220 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 Q6ZSR3 168 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 KRT74Q7RTS7 529 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 SIAH3Q8IW03 269 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 SKA3Q8IX90 412 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 OR1F12Q8NHA8 337 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 FGFBP3Q8TAT2 258 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 C15orf40Q8WUR7 153 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 GCDHQ92947 438 aaPredicted RBP18.13■□□□□ 0.49
VPS28-209ENST00000528142 TIMM10BQ9Y5J6 103 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 CFAP47Q6ZTR5 3102 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 SPTBN4Q9H254 2564 aa18.13■□□□□ 0.49
VPS28-209ENST00000528142 CIB4A0PJX0 185 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 OR6C65A6NJZ3 312 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 KRT33AO76009 404 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 PATE4P0C8F1 98 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 ARSBP15848 533 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 MRPS10P82664 201 aaKnown RBP18.12■□□□□ 0.49
VPS28-209ENST00000528142 PSG4Q00888 419 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 KLF9Q13886 244 aaPredicted RBP18.12■□□□□ 0.49
VPS28-209ENST00000528142 PLA1AQ53H76 456 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 CHMP1BQ7LBR1 199 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 OR4D6Q8NGJ1 314 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 OR13C9Q8NGT0 318 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 OR52I2Q8NH67 350 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 SORCS2Q96PQ0 1159 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 CNTD2Q9H8S5 307 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 NPAP1Q9NZP6 1156 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 RBMX2Q9Y388 322 aaKnown RBP18.12■□□□□ 0.49
VPS28-209ENST00000528142 LOC400499M0QZD8 3231 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 FRYQ5TBA9 3013 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 TRAV17A0A0B4J275 112 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 MEIOCA2RUB1 952 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 IGHG3P01860 377 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 GDNFP39905 211 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 RANBP1P43487 201 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 PCBD1P61457 104 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 DRAM2Q6UX65 266 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 PGAP1Q75T13 922 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 SLC16A14Q7RTX9 510 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 OR5AS1Q8N127 324 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 ITPKCQ96DU7 683 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 OR2H1Q9GZK4 316 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 WNT5BQ9H1J7 359 aa18.12■□□□□ 0.49
VPS28-209ENST00000528142 METTL17Q9H7H0 456 aaPredicted RBP18.12■□□□□ 0.49
VPS28-209ENST00000528142 A0A0B4J293 547 aa18.11■□□□□ 0.49
VPS28-209ENST00000528142 GGT3PA6NGU5 568 aa18.11■□□□□ 0.49
VPS28-209ENST00000528142 MMP7P09237 267 aaPredicted RBP18.11■□□□□ 0.49
VPS28-209ENST00000528142 PTHLHP12272 177 aa18.11■□□□□ 0.49
VPS28-209ENST00000528142 GABRA1P14867 456 aa18.11■□□□□ 0.49
VPS28-209ENST00000528142 GFOD2Q3B7J2 385 aa18.11■□□□□ 0.49
VPS28-209ENST00000528142 DRAXINQ8NBI3 349 aaPredicted RBP18.11■□□□□ 0.49
VPS28-209ENST00000528142 AKR7LQ8NHP1 331 aa18.11■□□□□ 0.49
VPS28-209ENST00000528142 FCAMRQ8WWV6 532 aa18.11■□□□□ 0.49
VPS28-209ENST00000528142 HPS1Q92902 700 aa18.11■□□□□ 0.49
VPS28-209ENST00000528142 UPRTQ96BW1 309 aa18.11■□□□□ 0.49
VPS28-209ENST00000528142 UQCC2Q9BRT2 126 aa18.11■□□□□ 0.49
VPS28-209ENST00000528142 MARVELD1Q9BSK0 173 aa18.11■□□□□ 0.49
VPS28-209ENST00000528142 V9GYS6 101 aa18.11■□□□□ 0.49
VPS28-209ENST00000528142 KDM4BO94953 1096 aa18.1■□□□□ 0.49
VPS28-209ENST00000528142 ARF1P84077 181 aaKnown RBP18.1■□□□□ 0.49
VPS28-209ENST00000528142 HGFACQ04756 655 aa18.1■□□□□ 0.49
VPS28-209ENST00000528142 DYRK1AQ13627 763 aa18.1■□□□□ 0.49
VPS28-209ENST00000528142 ZNF627Q7L945 461 aa18.1■□□□□ 0.49
VPS28-209ENST00000528142 ADGRE4PQ86SQ3 457 aa18.1■□□□□ 0.49
VPS28-209ENST00000528142 PTX4Q96A99 478 aa18.1■□□□□ 0.49
VPS28-209ENST00000528142 APH1AQ96BI3 265 aa18.1■□□□□ 0.49
VPS28-209ENST00000528142 DIABLOQ9NR28 239 aa18.1■□□□□ 0.49
VPS28-209ENST00000528142 FARS2O95363 451 aaKnown RBP18.09■□□□□ 0.49
VPS28-209ENST00000528142 TGM6O95932 706 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms