RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 DCBLD2Q96PD2 775 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 NICN1Q9BSH3 213 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 FKRPQ9H9S5 495 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 C1orf123Q9NWV4 160 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 IGHV1OR21-1A0A087WYE8 117 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 EPOPA6NHQ4 379 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 IGHV3-9P01782 118 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 PEBP1P30086 187 aaKnown RBP14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 DHRS2Q13268 280 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 C9orf152Q5JTZ5 239 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 FIP1L1Q6UN15 594 aaKnown RBP14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 CBLN3Q6UW01 205 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 OR4S1Q8NGB4 309 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 OR6K3Q8NGY3 331 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 OCSTAMPQ9BR26 566 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 ADAT1Q9BUB4 502 aaKnown RBP14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 WWTR1Q9GZV5 400 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 KCNG2Q9UJ96 466 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 RAB22AQ9UL26 194 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 SLC22A13Q9Y226 551 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 OTOFQ9HC10 1997 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 A0A087WUJ7 227 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 ANKRD34CP0C6C1 535 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 SFTA3P0C7M3 94 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 EIF1P41567 113 aaKnown RBP14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 RNF4P78317 190 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 GABREP78334 506 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 HLA-BQ31612 363 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 SLC25A30Q5SVS4 291 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 ZNF770Q6IQ21 691 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 GUSBP11Q6P575 273 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 OVCH2Q7RTZ1 564 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 LYG2Q86SG7 212 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 SMRP1Q8NCR6 262 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 OR2I1PQ8NGU4 316 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 MARCH1Q8TCQ1 289 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 NIPSNAP3BQ9BS92 247 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 TOLLIPQ9H0E2 274 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 TUBG2Q9NRH3 451 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 MIOXQ9UGB7 285 aa14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 SIRT4Q9Y6E7 314 aaPredicted RBP14.7□□□□□ -0.06
CCDC88B-209ENST00000494080 IGKV1-8A0A0C4DH67 115 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 ITGB2P05107 769 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 SPP1P10451 314 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 RPA2P15927 270 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 PNLIPRP2P54317 469 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 CCL7P80098 99 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 YRDCQ86U90 279 aaKnown RBP14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 OR6S1Q8NH40 331 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 CCDC74BQ96LY2 380 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 ADGRL4Q9HBW9 690 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 KCNS2Q9ULS6 477 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 DDAH2O95865 285 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 IGHA1P01876 353 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 CRYBA1P05813 215 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 CD63P08962 238 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 APOBEC1P41238 236 aaKnown RBP14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 PJVKQ0ZLH3 352 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 DOC2BQ14184 412 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 BEND4Q6ZU67 534 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 TMPRSS11FQ6ZWK6 438 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 ZNF695Q8IW36 515 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 LINC00469Q8N7U9 141 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 OR2G2Q8NGZ5 317 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 FRG2CA6NGY1 282 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 IL9P15248 144 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 ANK1P16157 1881 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 ZNF709Q8N972 641 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 ASB13Q8WXK3 278 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 ZNF845Q96IR2 970 aaPredicted RBP14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 SIGLEC11Q96RL6 698 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 PIGQQ9BRB3 760 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 VN1R1Q9GZP7 353 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 SCN2AQ99250 2005 aa14.69□□□□□ -0.06
CCDC88B-209ENST00000494080 HRKO00198 91 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 MFAP5Q13361 173 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 FAM199XQ6PEV8 388 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 CMTM3Q96MX0 182 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 SHISA8B8ZZ34 492 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 LRP3O75074 770 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 CARD18P57730 90 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 TAS2R46P59540 309 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 EXOSC6Q5RKV6 272 aaKnown RBP14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 CLEC9AQ6UXN8 241 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 ZAR1Q86SH2 424 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 GLRX5Q86SX6 157 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 SKA3Q8IX90 412 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 CRIPAKQ8N1N5 446 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 ZSCAN4Q8NAM6 433 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 SPIN2AQ99865 258 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 SPIN2BQ9BPZ2 258 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 ZNF251Q9BRH9 671 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 FTCDNL1E5RQL4 147 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 GLI4P10075 376 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 MSX1P28360 303 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 F2RL1P55085 397 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 DMKNQ6E0U4 476 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 ANGPTL5Q86XS5 388 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 UBL7Q96S82 380 aaPredicted RBP14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 UTP23Q9BRU9 249 aaKnown RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms