RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 GLS2Q9UI32 602 aa6.36□□□□□ -1.39
USP54-211ENST00000474929 ZNF229Q9UJW7 825 aa6.36□□□□□ -1.39
USP54-211ENST00000474929 ZNF180Q9UJW8 692 aa6.36□□□□□ -1.39
USP54-211ENST00000474929 UGT2A1Q9Y4X1 527 aa6.36□□□□□ -1.39
USP54-211ENST00000474929 OR6C6A6NF89 314 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 DYNC1I1O14576 645 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 RIPK2O43353 540 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 FMO6PO60774 539 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 TRMUO75648 421 aaKnown RBP6.35□□□□□ -1.39
USP54-211ENST00000474929 SLC2A10O95528 541 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 SNRPAP09012 282 aaKnown RBP6.35□□□□□ -1.39
USP54-211ENST00000474929 LINC00032P0C843 101 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 MYL2P10916 166 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 BGNP21810 368 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 LRRC74AQ0VAA2 488 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 SEC23BQ15437 767 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 ABCA11PQ4W5N1 156 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 ATPAF1Q5TC12 328 aaPredicted RBP6.35□□□□□ -1.39
USP54-211ENST00000474929 HHATQ5VTY9 493 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 LGALS9CQ6DKI2 356 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 OR4F3Q6IEY1 312 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 C1orf94Q6P1W5 598 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 TMEM65Q6PI78 240 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 C16orf89Q6UX73 402 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 NANOGNBQ7Z5D8 188 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 CPLX4Q7Z7G2 160 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 DHDDSQ86SQ9 333 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 CLIP4Q8N3C7 705 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 UBLCP1Q8WVY7 318 aaPredicted RBP6.35□□□□□ -1.39
USP54-211ENST00000474929 CCL13Q99616 98 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 PITX2Q99697 317 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 ALG12Q9BV10 488 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 FUT8Q9BYC5 575 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 TMEM27Q9HBJ8 222 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 ISYNA1Q9NPH2 558 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 SLC25A10Q9UBX3 287 aaPredicted RBP6.35□□□□□ -1.39
USP54-211ENST00000474929 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.35□□□□□ -1.39
USP54-211ENST00000474929 KLK5Q9Y337 293 aaPredicted RBP6.35□□□□□ -1.39
USP54-211ENST00000474929 V9GYY5 206 aaPredicted RBP6.35□□□□□ -1.39
USP54-211ENST00000474929 PKHD1P08F94 4074 aa6.35□□□□□ -1.39
USP54-211ENST00000474929 A0A0G2JPF8 293 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 SMIM23A6NLE4 172 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 HNRNPCL2B2RXH8 293 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 HNRNPCL3B7ZW38 293 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 HNRNPCL1O60812 293 aaKnown RBP6.34□□□□□ -1.39
USP54-211ENST00000474929 KRT75O95678 551 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 SHBGP04278 402 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 BCHEP06276 602 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 OR8U8P0C7N1 319 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 HNRNPCL4P0DMR1 293 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 GCAP28676 217 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 PRKAR1BP31321 381 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 NAA10P41227 235 aaPredicted RBP6.34□□□□□ -1.39
USP54-211ENST00000474929 TGM4P49221 684 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 POU3F4P49335 361 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 CLDN8P56748 225 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 DNAJB13P59910 316 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 MALLQ13021 153 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 AQP6Q13520 282 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 KIR2DS1Q14954 304 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 PCK2Q16822 640 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 KANK2Q63ZY3 851 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 FOXL2NBQ6ZUU3 175 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 CBLL1Q75N03 491 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 C10orf107Q8IVU9 208 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 FAM71E2Q8N5Q1 922 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 KRTCAP2Q8N6L1 136 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 TWIST2Q8WVJ9 160 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 SPRYD4Q8WW59 207 aaPredicted RBP6.34□□□□□ -1.39
USP54-211ENST00000474929 ASB10Q8WXI3 467 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 RBP7Q96R05 134 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 KRTAP4-5Q9BYR2 181 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 TXLNGYQ9BZA5 131 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 GHITMQ9H3K2 345 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 C19orf73Q9NVV2 129 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 TAS2R5Q9NYW4 299 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 USE1Q9NZ43 259 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 TMEM216Q9P0N5 145 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.34□□□□□ -1.39
USP54-211ENST00000474929 DNAJC15Q9Y5T4 150 aa6.34□□□□□ -1.39
USP54-211ENST00000474929 A0A0B4J2E0 115 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 A0A1B0GX12 115 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 A0A1W2PPM1 405 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 TLDC2A0PJX2 215 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 FAM90A22PA8MWA6 464 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 CCRL2O00421 344 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 PEX11AO75192 247 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 DEDDO75618 318 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 TIPRLO75663 272 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 OR2F2O95006 317 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 CPSF4O95639 269 aaKnown RBP6.33□□□□□ -1.4
USP54-211ENST00000474929 SNRNP70P08621 437 aaKnown RBP6.33□□□□□ -1.4
USP54-211ENST00000474929 ABHD2P08910 425 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 UMPSP11172 480 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 NDUFB7P17568 137 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 PAX6P26367 422 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 RAB13P51153 203 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 SLC25A1P53007 311 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 SSX2Q16385 188 aa6.33□□□□□ -1.4
USP54-211ENST00000474929 ZNF74Q16587 644 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms