RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 CACNA1CQ13936 2221 aa13.11□□□□□ -0.31
USP4-203ENST00000415188 UBE2QL1A1L167 161 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 LDLRAD4O15165 306 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 EFNA2O43921 213 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 SCGNO76038 276 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 LPLP06858 475 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 CD63P08962 238 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 P2RY4P51582 365 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 EFNB2P52799 333 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 PER3P56645 1201 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 CLRN1P58418 232 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 TAS2R19P59542 299 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 RAP2BP61225 183 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 PLA2G7Q13093 441 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 PCOLCEQ15113 449 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 KCNMB1Q16558 191 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 ZBTB37Q5TC79 503 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 RAB12Q6IQ22 244 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 OPN5Q6U736 354 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 NLRC3Q7RTR2 1065 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 MDGA2Q7Z553 956 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 ELMOD2Q8IZ81 293 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 MEIOBQ8N635 442 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 TMEM229BQ8NBD8 167 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 GALNT11Q8NCW6 608 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 BEST4Q8NFU0 473 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 OR4C16Q8NGL9 310 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 OR6X1Q8NH79 312 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 PNPLA2Q96AD5 504 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 SLAMF6Q96DU3 332 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 SORCS2Q96PQ0 1159 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 ZNF700Q9H0M5 742 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 ZNF552Q9H707 407 aaPredicted RBP13.1□□□□□ -0.31
USP4-203ENST00000415188 FAM206AQ9NX38 181 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 MED29Q9NX70 200 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 UPB1Q9UBR1 384 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 ALPK2Q86TB3 2170 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 SHANK1Q9Y566 2161 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 RP1L1Q8IWN7 2480 aaPredicted RBP13.1□□□□□ -0.31
USP4-203ENST00000415188 H3BML4 177 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 TRAF3IP2O43734 574 aaPredicted RBP13.1□□□□□ -0.31
USP4-203ENST00000415188 ERCC1P07992 297 aaPredicted RBP13.1□□□□□ -0.31
USP4-203ENST00000415188 RAD52P43351 418 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 SLC35A1P78382 337 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 GLYATL3Q5SZD4 288 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 LRFN4Q6PJG9 635 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 SLC25A47Q6Q0C1 308 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 Q6ZTK2 550 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 LYPD6Q86Y78 171 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 LINC00346Q8IVM7 164 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 PLPP7Q8NBV4 271 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 PPP1R14AQ96A00 147 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 MESP1Q9BRJ9 268 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 UQCC2Q9BRT2 126 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 MGAT4CQ9UBM8 478 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 HRH3Q9Y5N1 445 aa13.1□□□□□ -0.31
USP4-203ENST00000415188 NAV2Q8IVL1 2488 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 IGKV1D-43A0A0B4J1Z2 117 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 ZNF878C9JN71 531 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 DOK2O60496 412 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 ACSM4P0C7M7 580 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 PGA4P0DJD7 388 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 PGA3P0DJD8 388 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 PTHLHP12272 177 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 GTF2F2P13984 249 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 BDKRB2P30411 391 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 PSMA6P60900 246 aaKnown RBP13.09□□□□□ -0.31
USP4-203ENST00000415188 PLEKHN1Q494U1 663 aaPredicted RBP13.09□□□□□ -0.31
USP4-203ENST00000415188 C6orf183Q5T699 404 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 OTPQ5XKR4 325 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 SLC36A1Q7Z2H8 476 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 GTPBP8Q8N3Z3 284 aaPredicted RBP13.09□□□□□ -0.31
USP4-203ENST00000415188 OR11H4Q8NGC9 324 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 OR2T35Q8NGX2 323 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 M1APQ8TC57 530 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 MS4A3Q96HJ5 214 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 NUDT16L1Q9BRJ7 211 aaKnown RBP13.09□□□□□ -0.31
USP4-203ENST00000415188 SEC22CQ9BRL7 303 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 GINS4Q9BRT9 223 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 TMPRSS13Q9BYE2 586 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 ALX4Q9H161 411 aaPredicted RBP13.09□□□□□ -0.31
USP4-203ENST00000415188 METTL17Q9H7H0 456 aaPredicted RBP13.09□□□□□ -0.31
USP4-203ENST00000415188 BEX1Q9HBH7 125 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 CENPMQ9NSP4 180 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 FBLN5Q9UBX5 448 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 SLC23A1Q9UHI7 598 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 RAB22AQ9UL26 194 aa13.09□□□□□ -0.31
USP4-203ENST00000415188 USP9YO00507 2555 aaPredicted RBP13.08□□□□□ -0.31
USP4-203ENST00000415188 PRRC2CQ9Y520 2896 aaKnown RBP13.08□□□□□ -0.32
USP4-203ENST00000415188 METTL21EPA6NDL7 271 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 AQP7P3A6NL99 342 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 H3BSH0 61 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 P2RY10O00398 339 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 KDM4BO94953 1096 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 OR2A4O95047 310 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 PMS2P2O95744 297 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 BPNT1O95861 308 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 IGHEP01854 428 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 ITGA3P26006 1051 aa13.08□□□□□ -0.32
USP4-203ENST00000415188 GSK3AP49840 483 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms