RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CCDC54Q8NEL0 328 aa8.4□□□□□ -1.07
COL28A1-201ENST00000399429 OR4A4PQ8NGN8 299 aa8.4□□□□□ -1.07
COL28A1-201ENST00000399429 KCNG3Q8TAE7 436 aa8.4□□□□□ -1.07
COL28A1-201ENST00000399429 RPUSD4Q96CM3 377 aaKnown RBP8.4□□□□□ -1.07
COL28A1-201ENST00000399429 RAB18Q9NP72 206 aa8.4□□□□□ -1.07
COL28A1-201ENST00000399429 PARD6AQ9NPB6 346 aa8.4□□□□□ -1.07
COL28A1-201ENST00000399429 PARP11Q9NR21 331 aa8.4□□□□□ -1.07
COL28A1-201ENST00000399429 NXT1Q9UKK6 140 aaKnown RBP8.4□□□□□ -1.07
COL28A1-201ENST00000399429 MANSC4A6NHS7 340 aaPredicted RBP8.39□□□□□ -1.07
COL28A1-201ENST00000399429 TMEM127O75204 238 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 GPR75O95800 540 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 OR8U8P0C7N1 319 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 POLR2HP52434 150 aaKnown RBP8.39□□□□□ -1.07
COL28A1-201ENST00000399429 GAS1P54826 345 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 RPS18P62269 152 aaKnown RBP8.39□□□□□ -1.07
COL28A1-201ENST00000399429 LBHQ53QV2 105 aaPredicted RBP8.39□□□□□ -1.07
COL28A1-201ENST00000399429 PYY3Q5JQD4 70 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 HOXB13Q92826 284 aaPredicted RBP8.39□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF2Q9BSG1 426 aaPredicted RBP8.39□□□□□ -1.07
COL28A1-201ENST00000399429 DDA1Q9BW61 102 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 HAO2Q9NYQ3 351 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 MRM2Q9UI43 246 aaKnown RBP8.39□□□□□ -1.07
COL28A1-201ENST00000399429 Q9Y3F1 56 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 OR6C6A6NF89 314 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 TMEM189-UBE2V1I3L0A0 370 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 CTSAP10619 480 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 CRABP1P29762 137 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 CTHP32929 405 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF709Q8N972 641 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 GTF3AQ92664 365 aaKnown RBP8.39□□□□□ -1.07
COL28A1-201ENST00000399429 MISP3Q96FF7 219 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 TMEM68Q96MH6 324 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 PRDM7Q9NQW5 492 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 PRTFDC1Q9NRG1 225 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 CACNA1DQ01668 2161 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 SCN3AQ9NY46 2000 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 C20orf202A1L168 122 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 OLFM2O95897 454 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 SFTPDP35247 375 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 SNCAP37840 140 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 KCNIP4Q6PIL6 250 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 ZNF813Q6ZN06 617 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 BAGE3Q86Y29 109 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 BAGE2Q86Y30 109 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 LGI3Q8N145 548 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 NKAIN3Q8N8D7 197 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 C14orf144Q96I85 54 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 IGSF21Q96ID5 467 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 AP1S3Q96PC3 154 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 SPIN2AQ99865 258 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 SPIN2BQ9BPZ2 258 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 NMES1Q9C002 83 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 MAGT1Q9H0U3 335 aa8.39□□□□□ -1.07
COL28A1-201ENST00000399429 CENPVL1A0A0U1RR11 272 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 MSGN1A6NI15 193 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 CST7O76096 145 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 SFT2D2O95562 160 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 IGHV2-70P01814 119 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 HIST1H1BP16401 226 aaKnown RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 HMGA1P17096 107 aaKnown RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 CDKN2AP42771 156 aaKnown RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 FHITP49789 147 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 NTHL1P78549 312 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 ERV3-1Q14264 604 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 DCXRQ7Z4W1 244 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 PRSS35Q8N3Z0 413 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 STT3BQ8TCJ2 826 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 ADOQ96SZ5 270 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 NRSN2Q9GZP1 204 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 B9D1Q9UPM9 204 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 KLF2Q9Y5W3 355 aaPredicted RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 TGIF2-C20orf24A0A0A6YYL0 155 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 TRAV34A0A0B4J273 112 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 RBFOX3A6NFN3 312 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 NUDT21O43809 227 aaKnown RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 PDGFBP01127 241 aaPredicted RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 RPLP1P05386 114 aaKnown RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 CHRM2P08172 466 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 PVRP15151 417 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 HOXA5P20719 270 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 CST5P28325 142 aaPredicted RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 GNG10P50151 68 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 EMDP50402 254 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 SLC17A1Q14916 467 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 KHDC3LQ587J8 217 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 TEX30Q5JUR7 227 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 WBP2NLQ6ICG8 309 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 FIGLAQ6QHK4 219 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 DRAM2Q6UX65 266 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 CCDC71LQ8N9Z2 235 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 OR51A2Q8NGJ7 313 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 IL22RA2Q969J5 263 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 C4orf45Q96LM5 186 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 ASB16Q96NS5 453 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 LMF2Q9BU23 707 aaKnown RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 METTL9Q9H1A3 318 aa8.38□□□□□ -1.07
COL28A1-201ENST00000399429 NXF5Q9H1B4 397 aaKnown RBP8.38□□□□□ -1.07
COL28A1-201ENST00000399429 HRASLS2Q9NWW9 162 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms