RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 GPR85P60893 370 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF239Q16600 458 aaKnown RBP11.81□□□□□ -0.52
CCDC3-202ENST00000378839 NKPD1Q17RQ9 610 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 RSPO1Q2MKA7 263 aaPredicted RBP11.81□□□□□ -0.52
CCDC3-202ENST00000378839 LY6G6FQ5SQ64 297 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 ATPAF1Q5TC12 328 aaPredicted RBP11.81□□□□□ -0.52
CCDC3-202ENST00000378839 TMPPEQ6ZT21 453 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 TMEM104Q8NE00 496 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF837Q96EG3 531 aaPredicted RBP11.81□□□□□ -0.52
CCDC3-202ENST00000378839 SSX5O60225 188 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 LIPCP11150 499 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF43P17038 809 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 TAS2R19P59542 299 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 GABREP78334 506 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 OPCMLQ14982 345 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 KLHL24Q6TFL4 600 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 CD163Q86VB7 1156 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 NKAIN3Q8N8D7 197 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 ZC3H10Q96K80 434 aaKnown RBP11.81□□□□□ -0.52
CCDC3-202ENST00000378839 LYZL4Q96KX0 146 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF416Q9BWM5 594 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 GPR84Q9NQS5 396 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 RTTNQ86VV8 2226 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 NCOA6Q14686 2063 aaPredicted RBP11.81□□□□□ -0.52
CCDC3-202ENST00000378839 IGKV1-9A0A0C4DH69 117 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF878C9JN71 531 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 SULT1C2O00338 296 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 AMY2AP04746 511 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 UBALD2Q8IYN6 164 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 GTPBP8Q8N3Z3 284 aaPredicted RBP11.81□□□□□ -0.52
CCDC3-202ENST00000378839 ANGPTL6Q8NI99 470 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 PTX4Q96A99 478 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 SFXN2Q96NB2 322 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 FN3KRPQ9HA64 309 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 TMEM138Q9NPI0 162 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 VSIG4Q9Y279 399 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 KCNK7Q9Y2U2 307 aa11.81□□□□□ -0.52
CCDC3-202ENST00000378839 MELTFP08582 738 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 OR4E1P0C645 316 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 RAB6AP20340 208 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 NTF4P34130 210 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 OR3A4PP47883 348 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 RAP2BP61225 183 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 RPS18P62269 152 aaKnown RBP11.8□□□□□ -0.52
CCDC3-202ENST00000378839 SSBP1Q04837 148 aaKnown RBP11.8□□□□□ -0.52
CCDC3-202ENST00000378839 CDNFQ49AH0 187 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 ABHD12BQ7Z5M8 362 aaPredicted RBP11.8□□□□□ -0.52
CCDC3-202ENST00000378839 TMED4Q7Z7H5 227 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 ANGPTL5Q86XS5 388 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 WBP1Q96G27 269 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 RADILQ96JH8 1075 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 EDEM2Q9BV94 578 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 ANGPTL4Q9BY76 406 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF160Q9HCG1 818 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 RDH8Q9NYR8 311 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 RAB22AQ9UL26 194 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 COL27A1Q8IZC6 1860 aaPredicted RBP11.8□□□□□ -0.52
CCDC3-202ENST00000378839 LIFP15018 202 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 NFYAP23511 347 aaPredicted RBP11.8□□□□□ -0.52
CCDC3-202ENST00000378839 ACTBP60709 375 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 ACTG1P63261 375 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 Q0VFX4 171 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 C4orf46Q504U0 113 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 PEAR1Q5VY43 1037 aaPredicted RBP11.8□□□□□ -0.52
CCDC3-202ENST00000378839 FBXW5Q969U6 566 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 LIN37Q96GY3 246 aaPredicted RBP11.8□□□□□ -0.52
CCDC3-202ENST00000378839 FAM71F1Q96KD3 344 aaPredicted RBP11.8□□□□□ -0.52
CCDC3-202ENST00000378839 JSRP1Q96MG2 331 aaPredicted RBP11.8□□□□□ -0.52
CCDC3-202ENST00000378839 DMRTA2Q96SC8 542 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 SCPEP1Q9HB40 452 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 POLR1DQ9Y2S0 133 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 HDGFL3Q9Y3E1 203 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 NCKAP5O14513 1909 aa11.8□□□□□ -0.52
CCDC3-202ENST00000378839 LOC100509620A0A075B734 347 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 TMEM82A0PJX8 343 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 TMEM14DPA8MWL7 114 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF736B4DX44 427 aaPredicted RBP11.79□□□□□ -0.52
CCDC3-202ENST00000378839 M0R233 179 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 ADH6P28332 368 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 CX3CR1P49238 355 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 KCNMB1Q16558 191 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 GFOD2Q3B7J2 385 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 PLAC9Q5JTB6 97 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 TMEM65Q6PI78 240 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 FAM57BQ71RH2 274 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 TRAPPC6BQ86SZ2 158 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 ZNF775Q96BV0 537 aaPredicted RBP11.79□□□□□ -0.52
CCDC3-202ENST00000378839 TRAV14DV4A0A0A6YYC5 116 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 LOC102725191A0A1B0GVB3 256 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 OR5H15A6NDH6 313 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 LGALS8O00214 317 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 ARPC5O15511 151 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 MC2RQ01718 297 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 ENDOGQ14249 297 aaKnown RBP11.79□□□□□ -0.52
CCDC3-202ENST00000378839 SCGB2B2Q4G0G5 96 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 TMEM81Q6P7N7 255 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 SLC51BQ86UW2 128 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 BPIFB2Q8N4F0 458 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 SLC22A24Q8N4F4 322 aa11.79□□□□□ -0.52
CCDC3-202ENST00000378839 ZIC4Q8N9L1 334 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms