RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 S100A4P26447 101 aaKnown RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 AP2S1P53680 142 aaPredicted RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 DNAJB13P59910 316 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 HIKESHIQ53FT3 197 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 PDLIM3Q53GG5 364 aaPredicted RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 SHISA2Q6UWI4 295 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 NCCRP1Q6ZVX7 275 aaPredicted RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 NAT8LQ8N9F0 302 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 CYB561A3Q8NBI2 242 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 GLYATL2Q8WU03 294 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 SGK3Q96BR1 496 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 DAZAP1Q96EP5 407 aaKnown RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 GLIPR2Q9H4G4 154 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 CNOT11Q9UKZ1 510 aaKnown RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 TRAPPC4Q9Y296 219 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 MRPS28Q9Y2Q9 187 aaKnown RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 USF3Q68DE3 2245 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 A0A1W2PR48 441 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 TMEM30CPA0ZSE6 113 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 P2RY10O00398 339 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 ADAM11O75078 769 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 CBR1P16152 277 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 UGT2B10P36537 528 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 HAAOP46952 286 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 PTH2RP49190 550 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF260Q3ZCT1 412 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF620Q6ZNG0 422 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 SLC16A12Q6ZSM3 486 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 ADAMTS16Q8TE57 1224 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 FIZ1Q96SL8 496 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 CSPG4Q6UVK1 2322 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF99A8MXY4 864 aaPredicted RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 M0R3H8 397 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 NUPL2O15504 423 aaKnown RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 GSTZ1O43708 216 aaPredicted RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 SMIM17P0DL12 118 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 TIMP3P35625 211 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 RELAQ04206 551 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 TECRLQ5HYJ1 363 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 ACBD7Q8N6N7 88 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 OR5M8Q8NGP6 311 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 OR4A5Q8NH83 315 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 HTRA1Q92743 480 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 RPL3LQ92901 407 aaKnown RBP7.45□□□□□ -1.22
HMGB1-203ENST00000341423 TSSK2Q96PF2 358 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 P2RX4Q99571 388 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 MED29Q9NX70 200 aa7.45□□□□□ -1.22
HMGB1-203ENST00000341423 SHISA8B8ZZ34 492 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 MS4A18H0YCH9 400 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 HLA-DPB1P04440 258 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 FUT4P22083 530 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 CALCRP30988 508 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 SDC2P34741 201 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 HOXD13P35453 343 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 PPP1CCP36873 323 aaKnown RBP7.44□□□□□ -1.22
HMGB1-203ENST00000341423 SLC35A2P78381 396 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 OR4D1Q15615 310 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 SRSF7Q16629 238 aaKnown RBP eCLIP7.44□□□□□ -1.221e-10■■■■□ 20
HMGB1-203ENST00000341423 CPEB4Q17RY0 729 aaKnown RBP eCLIP7.44□□□□□ -1.22
HMGB1-203ENST00000341423 MS4A18Q3C1V0 323 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 DOK3Q7L591 496 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 ALPK2Q86TB3 2170 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 NKAIN4Q8IVV8 208 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 CCDC103Q8IW40 242 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 MAPK1IP1LQ8NDC0 245 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 OR4D10Q8NGI6 311 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 REEP6Q96HR9 211 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 PDCD1LG2Q9BQ51 273 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 SYT4Q9H2B2 425 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 NPPAP01160 153 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 FBXO45P0C2W1 286 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 MADCAM1Q13477 382 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 FAM58AQ8N1B3 248 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF781Q8N8C0 355 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 RNF166Q96A37 237 aaPredicted RBP7.44□□□□□ -1.22
HMGB1-203ENST00000341423 MYEOVQ96EZ4 313 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 LOC100509620A0A075B734 347 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 SULT1C2O00338 296 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 ADAP1O75689 374 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 CELA2AP08217 269 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 IL12AP29459 219 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 DUSP5Q16690 384 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF385BQ569K4 471 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 UBE2UQ5VVX9 321 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 SLC35F2Q8IXU6 374 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 SEC22AQ96IW7 307 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 MAGT1Q9H0U3 335 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 RCE1Q9Y256 329 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 TRAV40A0A0B4J280 105 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 SORBS2O94875 1100 aaKnown RBP7.44□□□□□ -1.22
HMGB1-203ENST00000341423 GAPDHP04406 335 aaKnown RBP7.44□□□□□ -1.22
HMGB1-203ENST00000341423 GPX3P22352 226 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 SDHAP31040 664 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 HOXC5Q00444 222 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 TRAM1Q15629 374 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF322Q6U7Q0 402 aaPredicted RBP7.44□□□□□ -1.22
HMGB1-203ENST00000341423 ZNF778Q96MU6 729 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 TGIF2Q9GZN2 237 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 PCDHAC1Q9H158 963 aa7.44□□□□□ -1.22
HMGB1-203ENST00000341423 PCNX2A6NKB5 2137 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms