RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 H2BFWTQ7Z2G1 175 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 EDARADDQ8WWZ3 215 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 HINT2Q9BX68 163 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 ULBP3Q9BZM4 244 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 TMEM235A6NFC5 223 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 ST8SIA5O15466 376 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 CA3P07451 260 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 RTL8BQ17RB0 113 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 BCDIN3DQ7Z5W3 292 aaKnown RBP9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 HPSE2Q8WWQ2 592 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 DVL3Q92997 716 aaPredicted RBP9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 SLC6A17Q9H1V8 727 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 KLRC4-KLRK1H3BQV0 150 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 EPHA2P29317 976 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 CCSMST1Q4G0I0 132 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 Q7L0L9 218 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 TMEM178AQ8NBL3 297 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 DMBX1Q8NFW5 382 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 CHAC2Q8WUX2 184 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 TUBG2Q9NRH3 451 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 GNG12Q9UBI6 72 aa9.33□□□□□ -0.92
CCDC88A-202ENST00000336838 LINC00862A6NCI5 91 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 FUT7Q11130 342 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 ADIRFQ15847 76 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 IQCJQ1A5X6 159 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 CDC20BQ86Y33 519 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 NLGN4XQ8N0W4 816 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 SIRT6Q8N6T7 355 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 MACROD1Q9BQ69 325 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 CABLES2Q9BTV7 478 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 PLAC1Q9HBJ0 212 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 SEMG1P04279 462 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 LIPCP11150 499 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 SRYQ05066 204 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 ANKUB1A6NFN9 424 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 ETHE1O95571 254 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 PVRP15151 417 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 TRAT1Q6PIZ9 186 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 CA13Q8N1Q1 262 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 DERL3Q96Q80 235 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 SMIM14Q96QK8 99 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 H7C1C5 153 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 DPPA3Q6W0C5 159 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 C12orf76Q8N812 135 aaPredicted RBP9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 M0R135 149 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 DEGS1O15121 323 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 NKX2-2O95096 273 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 NXPH2O95156 264 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 OMGP23515 440 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 SSX1Q16384 188 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 LRRC18Q8N456 261 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF799Q96GE5 643 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 OR8B4Q96RC9 309 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 BOLA1Q9Y3E2 137 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 LTBP4Q8N2S1 1624 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 CD3DP04234 171 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 FUT6P51993 359 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 SLC35G3Q8N808 338 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 WFDC5Q8TCV5 224 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 ABHD5Q8WTS1 349 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 MAP3K3Q99759 626 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 PBOV1Q9GZY1 135 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 SLC35B3Q9H1N7 401 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 SIGLEC6O43699 453 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 BPIFB3P59826 476 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 PLGLAQ15195 96 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF761Q86XN6 746 aaPredicted RBP9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 RBM45Q8IUH3 476 aaKnown RBP9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 FER1L6-AS2Q96M78 137 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 MRPS18AQ9NVS2 196 aaKnown RBP9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF225Q9UK10 706 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 CXCL12P48061 93 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 NKG7Q16617 165 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 ACAD8Q9UKU7 415 aa9.32□□□□□ -0.92
CCDC88A-202ENST00000336838 ELOA3CA0A087WX78 387 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 J3QR89 54 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 SH2D1BO14796 132 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 NRASP01111 189 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 MBPP02686 304 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 DEFB103AP81534 67 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 NLGN4YQ8NFZ3 816 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 AUNIPQ9H7T9 357 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 FGF21Q9NSA1 209 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 CYB561P49447 251 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 RAC1P63000 192 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 SOWAHCQ53LP3 525 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF542PQ5EBM4 170 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 SLC37A2Q8TED4 501 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 RAB40CQ96S21 281 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 ZNF2Q9BSG1 426 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 TMEM30AQ9NV96 361 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 COA3Q9Y2R0 106 aaPredicted RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 CEP250Q9BV73 2442 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 NKX6-3A6NJ46 265 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 FGF17O60258 216 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 RAE1P78406 368 aaKnown RBP9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 COX19Q49B96 90 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 Q6ZRG5 221 aa9.31□□□□□ -0.92
CCDC88A-202ENST00000336838 ZBTB44Q8NCP5 570 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms