RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 ECDO95905 644 aaPredicted RBP13.81□□□□□ -0.2
CLN3-251ENST00000636853 DHFRP00374 187 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 NR2C1P13056 603 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 MSR1P21757 451 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 ITGA3P26006 1051 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 CX3CR1P49238 355 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 MRPS10P82664 201 aaKnown RBP13.81□□□□□ -0.2
CLN3-251ENST00000636853 FOXO1Q12778 655 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 DCAF10Q5QP82 559 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 C10orf128Q5T292 105 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 ABHD17BQ5VST6 288 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 LAMTOR1Q6IAA8 161 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 COMMD2Q86X83 199 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 ADAMTS17Q8TE56 1095 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 ZNF837Q96EG3 531 aaPredicted RBP13.81□□□□□ -0.2
CLN3-251ENST00000636853 NELFAQ9H3P2 528 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 ZFP64Q9NPA5 681 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 RYDENQ9NUL5 291 aaKnown RBP13.81□□□□□ -0.2
CLN3-251ENST00000636853 PTTG3PQ9NZH4 202 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 MED13Q9UHV7 2174 aa13.81□□□□□ -0.2
CLN3-251ENST00000636853 CACNA1HO95180 2353 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 A0A1B0GVI7 797 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 ANKRD20A5PA0PJZ0 165 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 GALR2O43603 387 aaPredicted RBP13.8□□□□□ -0.2
CLN3-251ENST00000636853 NEURL1O76050 574 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 NTF4P34130 210 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 GUCA2AQ02747 115 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 ENDOGQ14249 297 aaKnown RBP13.8□□□□□ -0.2
CLN3-251ENST00000636853 TRIP6Q15654 476 aaKnown RBP13.8□□□□□ -0.2
CLN3-251ENST00000636853 OR10K2Q6IF99 312 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 RHOUQ7L0Q8 258 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 OR4D6Q8NGJ1 314 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 OR6M1Q8NGM8 313 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 AKAP1Q92667 903 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLN3-251ENST00000636853 NABP1Q96AH0 204 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 ULBP2Q9BZM5 246 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 NKIRAS2Q9NYR9 191 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 FOXD3Q9UJU5 478 aaPredicted RBP13.8□□□□□ -0.2
CLN3-251ENST00000636853 PCDHGA1Q9Y5H4 931 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 RTTNQ86VV8 2226 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 LEUTXA8MZ59 168 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 DHHO43323 396 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 H2AFB2P0C5Z0 115 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 CD37P11049 281 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 POU3F2P20265 443 aaPredicted RBP13.8□□□□□ -0.2
CLN3-251ENST00000636853 CLDN15P56746 228 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 LSM6P62312 80 aaKnown RBP13.8□□□□□ -0.2
CLN3-251ENST00000636853 GFOD2Q3B7J2 385 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 LINC00696Q6ZRV3 163 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 FAM57BQ71RH2 274 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 BTN2A1Q7KYR7 527 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 ABHD12BQ7Z5M8 362 aaPredicted RBP13.8□□□□□ -0.2
CLN3-251ENST00000636853 ZNF283Q8N7M2 679 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 SUMF1Q8NBK3 374 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 OR52N4Q8NGI2 321 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 OR10D3Q8NH80 312 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 C15orf40Q8WUR7 153 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 PHF21AQ96BD5 680 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 SCMH1Q96GD3 660 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 CITED4Q96RK1 184 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 BEX1Q9HBH7 125 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 PLA2G3Q9NZ20 509 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 COPZ2Q9P299 210 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 SLC5A6Q9Y289 635 aa13.8□□□□□ -0.2
CLN3-251ENST00000636853 C5orf63A6NC05 138 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 OR5H15A6NDH6 313 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 MEIS3P1A6NDR6 274 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 FCER2P06734 321 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 BDKRB2P30411 391 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 ZNF133P52736 654 aaPredicted RBP13.79□□□□□ -0.2
CLN3-251ENST00000636853 AP3S2P59780 193 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 HYAL4Q2M3T9 481 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 JMJD6Q6NYC1 403 aaPredicted RBP13.79□□□□□ -0.2
CLN3-251ENST00000636853 ZNF813Q6ZN06 617 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 NAA40Q86UY6 237 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 LYPD6Q86Y78 171 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 FAM71F1Q96KD3 344 aaPredicted RBP13.79□□□□□ -0.2
CLN3-251ENST00000636853 SF3B5Q9BWJ5 86 aaKnown RBP13.79□□□□□ -0.2
CLN3-251ENST00000636853 MOB1AQ9H8S9 216 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 GPR84Q9NQS5 396 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 EIF3KQ9UBQ5 218 aaKnown RBP13.79□□□□□ -0.2
CLN3-251ENST00000636853 FLVCR2Q9UPI3 526 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 LOC390937A0A1W2PQ73 354 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 E9PLN8 166 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 STMND1H3BQB6 276 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 DNPH1O43598 174 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 ALDOBP05062 364 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 ABOP16442 354 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 DNM1P46Q6ZS02 220 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 C20orf196Q8IYI0 205 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 BEST4Q8NFU0 473 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 OR2M7Q8NG81 312 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 OR1M1Q8NGA1 313 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 OR13C9Q8NGT0 318 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 OR2V1Q8NHB1 315 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 ADGRG7Q96K78 797 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 UTP23Q9BRU9 249 aaKnown RBP13.79□□□□□ -0.2
CLN3-251ENST00000636853 GHITMQ9H3K2 345 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 CNTD2Q9H8S5 307 aa13.79□□□□□ -0.2
CLN3-251ENST00000636853 BOKQ9UMX3 212 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms