RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 UBE2NP61088 152 aaKnown RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 EEF1A1P68104 462 aaKnown RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 EEF1A2Q05639 463 aaKnown RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 DUSP5Q16690 384 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 MAMSTRQ6ZN01 415 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 RPUSD4Q96CM3 377 aaKnown RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 TRAPPC2LQ9UL33 140 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 CLLU1OSQ5K130 101 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 ZNF362Q5T0B9 420 aaPredicted RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 FAM27D1Q5T7N8 215 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 CBLN2Q8IUK8 224 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 CD99L2Q8TCZ2 262 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 ULBP2Q9BZM5 246 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 ZNFX1Q9P2E3 1918 aaKnown RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 NSG1A0A0A6YYJ2 146 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 SSSCA1O60232 199 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 SFT2D2O95562 160 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 DUS4LO95620 317 aaKnown RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 CLDN2P57739 230 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 PPIAP62937 165 aaKnown RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 PLA1AQ53H76 456 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 ADAMTSL4Q6UY14 1074 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 NHLRC1Q6VVB1 395 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 DMBX1Q8NFW5 382 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 PINX1Q96BK5 328 aaKnown RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 KCNJ15Q99712 375 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 NMES1Q9C002 83 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 PLAC1Q9HBJ0 212 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 WSB1Q9Y6I7 421 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 HSD17B6O14756 317 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 TUSC2O75896 110 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 IGLV3-25P01717 112 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 IKZF1Q13422 519 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 COL19A1Q14993 1142 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 TUSC1Q2TAM9 212 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 FAM109BQ6ICB4 259 aaPredicted RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 TAAR9Q96RI9 348 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 ABHD1Q96SE0 405 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 RSRP1Q9BUV0 290 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 BANF2Q9H503 90 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 PDFQ9HBH1 243 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 SHROOM3Q8TF72 1996 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 MAP1BP46821 2468 aaKnown RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 COX5AP20674 150 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 TNFSF4P23510 183 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 GALR1P47211 349 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 ZNF345Q14585 488 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 LINC00346Q8IVM7 164 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 MS4A10Q96PG2 267 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 GPR87Q9BY21 358 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 TAF1LQ8IZX4 1826 aa8.11□□□□□ -1.11
VCL-206ENST00000623461 COL5A3P25940 1745 aaPredicted RBP8.11□□□□□ -1.11
VCL-206ENST00000623461 SLC10A1Q14973 349 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 AWAT1Q58HT5 328 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 NCMAPQ5T1S8 102 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 TFAP2EQ6VUC0 442 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 THNSL2Q86YJ6 484 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 APOBEC3BQ9UH17 382 aaKnown RBP8.1□□□□□ -1.11
VCL-206ENST00000623461 TGM5O43548 720 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 EIF4E2O60573 245 aaKnown RBP8.1□□□□□ -1.11
VCL-206ENST00000623461 NTF3P20783 257 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 RPL29P47914 159 aaKnown RBP8.1□□□□□ -1.11
VCL-206ENST00000623461 DSC1Q08554 894 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 DEFB110Q30KQ9 67 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 PLPP6Q8IY26 295 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 MMP21Q8N119 569 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 TP53I13Q8NBR0 393 aaPredicted RBP8.1□□□□□ -1.11
VCL-206ENST00000623461 OR5D18Q8NGL1 313 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 PACRGQ96M98 296 aaPredicted RBP8.1□□□□□ -1.11
VCL-206ENST00000623461 S1PR5Q9H228 398 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 A0A1B0GTL3 188 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 H0YGG7 62 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 ZNF865P0CJ78 1059 aaPredicted RBP8.1□□□□□ -1.11
VCL-206ENST00000623461 PTHLHP12272 177 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 HNRNPA2B1P22626 353 aaKnown RBP8.1□□□□□ -1.11
VCL-206ENST00000623461 AVPR2P30518 371 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 ECH1Q13011 328 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 SLC25A30Q5SVS4 291 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 SYT13Q7L8C5 426 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 BARHL1Q9BZE3 327 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 RCL1Q9Y2P8 373 aaKnown RBP8.1□□□□□ -1.11
VCL-206ENST00000623461 MYO16Q9Y6X6 1858 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 MFSD2BA6NFX1 497 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 ZNF25P17030 456 aaPredicted RBP8.1□□□□□ -1.11
VCL-206ENST00000623461 CST5P28325 142 aaPredicted RBP8.1□□□□□ -1.11
VCL-206ENST00000623461 GUCA2AQ02747 115 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 OLIG3Q7RTU3 272 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 MAP3K3Q99759 626 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 MMP24Q9Y5R2 645 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 SPAG17Q6Q759 2223 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 TRBV5-4A0A0C4DH59 114 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 FAM166BA8MTA8 275 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 PTGER4P35408 488 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 BCL6P41182 706 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 PMS2P11Q13670 270 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 ABHD5Q8WTS1 349 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 FKRPQ9H9S5 495 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 OPN4Q9UHM6 478 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 FBXO4Q9UKT5 387 aa8.1□□□□□ -1.11
VCL-206ENST00000623461 COA3Q9Y2R0 106 aaPredicted RBP8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms