RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 HSD17B7P56937 341 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 ZNF124Q15973 351 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.67□□□□□ -0.22
UPF1-204ENST00000596842 C1orf140Q5VVS0 124 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 OR10H5Q8NGA6 315 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 CELSR3Q9NYQ7 3312 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 SPTY2D1-AS1A0A0U1RR47 76 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 IL33O95760 270 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 PGAM2P15259 253 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 MGMTP16455 207 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 PPICP45877 212 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 AWAT2Q6E213 333 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 C11orf87Q6NUJ2 197 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 TMEM200AQ86VY9 491 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 NAXDQ8IW45 347 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 NAXEQ8NCW5 288 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 OR52N4Q8NGI2 321 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 OR6S1Q8NH40 331 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 MARCH1Q8TCQ1 289 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 TMED6Q8WW62 240 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 FOXQ1Q9C009 403 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 CNTD2Q9H8S5 307 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 GHRLQ9UBU3 117 aa13.67□□□□□ -0.22
UPF1-204ENST00000596842 METTL12A8MUP2 240 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 MPIG6BO95866 241 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 RPA2P15927 270 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 CD96P40200 585 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 NPY4RP50391 375 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 S100A12P80511 92 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 SERTAD2Q14140 314 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 ELOCQ15369 112 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 LANCL3Q6ZV70 420 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 OR13C8Q8NGS7 320 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 RPS10P5Q9NQ39 176 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 COPS7AQ9UBW8 275 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 A0A1W2PPC1 479 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 CRYBA1P05813 215 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 UBBP0CG47 229 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 UBCP0CG48 685 aaKnown RBP13.66□□□□□ -0.22
UPF1-204ENST00000596842 RPS27AP62979 156 aaKnown RBP13.66□□□□□ -0.22
UPF1-204ENST00000596842 UBA52P62987 128 aaKnown RBP13.66□□□□□ -0.22
UPF1-204ENST00000596842 FABP9Q0Z7S8 132 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 SNTB1Q13884 538 aaKnown RBP13.66□□□□□ -0.22
UPF1-204ENST00000596842 ISXQ2M1V0 245 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 TMPPEQ6ZT21 453 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 GTPBP8Q8N3Z3 284 aaPredicted RBP13.66□□□□□ -0.22
UPF1-204ENST00000596842 FAM71F1Q96KD3 344 aaPredicted RBP13.66□□□□□ -0.22
UPF1-204ENST00000596842 SLC25A21Q9BQT8 299 aaPredicted RBP13.66□□□□□ -0.22
UPF1-204ENST00000596842 ESRP2Q9H6T0 727 aaKnown RBP13.66□□□□□ -0.22
UPF1-204ENST00000596842 PHYHO14832 338 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 SYT7O43581 403 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 ITGB2P05107 769 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 IGHV4-34P06331 123 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 BDKRB2P30411 391 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 OR5T2Q8NGG2 359 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 OR52N5Q8NH56 324 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 C14orf79Q96F83 325 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 TCTN2Q96GX1 697 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 C20orf24Q9BUV8 137 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 CUTCQ9NTM9 273 aa13.66□□□□□ -0.22
UPF1-204ENST00000596842 DENND4AQ7Z401 1863 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 ZNF208O43345 1280 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 CNR1P21554 472 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 S100A10P60903 97 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 RNF144BQ7Z419 303 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 HSD17B13Q7Z5P4 300 aaPredicted RBP13.65□□□□□ -0.22
UPF1-204ENST00000596842 SVBPQ8N300 66 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 OR5M8Q8NGP6 311 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 OR2I1PQ8NGU4 316 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 OR10R2Q8NGX6 335 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 TCTEX1D2Q8WW35 142 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 PHB2Q99623 299 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 PAPOLGQ9BWT3 736 aaKnown RBP13.65□□□□□ -0.22
UPF1-204ENST00000596842 LHX6Q9UPM6 363 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 IGKV1D-43A0A0B4J1Z2 117 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 EIF2S3LQ2VIR3 472 aaKnown RBP13.65□□□□□ -0.22
UPF1-204ENST00000596842 TMEM71Q6P5X7 295 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 KLHL24Q6TFL4 600 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 LURAP1LQ8IV03 231 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 RPS4Y2Q8TD47 263 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 NICN1Q9BSH3 213 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 CSAG2Q9Y5P2 127 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 A0A0D9SG52 128 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 BGLAPP02818 100 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 NME1P15531 152 aaKnown RBP13.65□□□□□ -0.22
UPF1-204ENST00000596842 CHAF1BQ13112 559 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 ARFRP1Q13795 201 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 PEA15Q15121 130 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 EMC4Q5J8M3 183 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 SLC29A4Q7RTT9 530 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 NUP54Q7Z3B4 507 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 ELP5Q8TE02 316 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 POM121Q96HA1 1249 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 SLC46A1Q96NT5 459 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 PARP12Q9H0J9 701 aaKnown RBP13.65□□□□□ -0.22
UPF1-204ENST00000596842 HRH4Q9H3N8 390 aa13.65□□□□□ -0.22
UPF1-204ENST00000596842 SERPINF1P36955 418 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 PTGFRP43088 359 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 TFAP2EQ6VUC0 442 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 ANGPTL5Q86XS5 388 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms