RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ISG15P05161 165 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 CECR9P0C854 216 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 GALP22466 123 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 ANOS1P23352 680 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 PSMA1P25786 263 aaKnown RBP13.99□□□□□ -0.17
SS18-211ENST00000578954 TRAM1Q15629 374 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 TBC1D28Q2M2D7 210 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 BCL2L15Q5TBC7 163 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 ANKRD13BQ86YJ7 626 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 MS4A15Q8N5U1 240 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 OR8B12Q8NGG6 310 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 OR1J2Q8NGS2 313 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 GHSRQ92847 366 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 FUNDC2Q9BWH2 189 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 SP140LQ9H930 580 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 NPAP1Q9NZP6 1156 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 SLC22A13Q9Y226 551 aa13.99□□□□□ -0.17
SS18-211ENST00000578954 IGHV1-18A0A0C4DH31 117 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 A0A0U1RQV5 110 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 PNMA8CA0A1B0GUJ8 204 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 C5orf49A4QMS7 147 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 SC5DO75845 299 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 THBDP07204 575 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 UBCP0CG48 685 aaKnown RBP13.98□□□□□ -0.17
SS18-211ENST00000578954 SLC2A1P11166 492 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 CCL1P22362 96 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 SLC6A9P48067 706 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 RPS11P62280 158 aaKnown RBP eCLIP13.98□□□□□ -0.17
SS18-211ENST00000578954 RPS25P62851 125 aaKnown RBP13.98□□□□□ -0.17
SS18-211ENST00000578954 SLC3A1Q07837 685 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 YIF1BQ5BJH7 314 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 ZNF704Q6ZNC4 412 aaPredicted RBP13.98□□□□□ -0.17
SS18-211ENST00000578954 Q6ZSR3 168 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 FAM57BQ71RH2 274 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 NAA40Q86UY6 237 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 OR52H1Q8NGJ2 320 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 OR5AK2Q8NH90 309 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 RGP1Q92546 391 aaPredicted RBP13.98□□□□□ -0.17
SS18-211ENST00000578954 PPP1R14AQ96A00 147 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 PDCD1LG2Q9BQ51 273 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 TBCCD1Q9NVR7 557 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 NDUFA13Q9P0J0 144 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 ZNF319Q9P2F9 582 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 ENPP5Q9UJA9 477 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 ZNF281Q9Y2X9 895 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 CEPT1Q9Y6K0 416 aa13.98□□□□□ -0.17
SS18-211ENST00000578954 RELNP78509 3460 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 TRBV5-5A0A0J9YX44 114 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 WIPF3A6NGB9 483 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 GABARAPO95166 117 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 ANXA2P07355 339 aaKnown RBP13.97□□□□□ -0.17
SS18-211ENST00000578954 ZNF35P13682 527 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 ACHEP22303 614 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 PCSK6P29122 969 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 WNT5AP41221 380 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 CRYBB2P43320 205 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 TIMM50Q3ZCQ8 353 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 TMEM244Q5VVB8 128 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 GDPGP1Q6ZNW5 385 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 SLC16A12Q6ZSM3 486 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 PAQR4Q8N4S7 273 aaPredicted RBP13.97□□□□□ -0.17
SS18-211ENST00000578954 PGAM5Q96HS1 289 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 BCL7BQ9BQE9 202 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 COMMD4Q9H0A8 199 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 STUB1Q9UNE7 303 aa13.97□□□□□ -0.17
SS18-211ENST00000578954 A0A1B0GTI1 187 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 TRDV1A0A1B0GX56 115 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 C5orf63A6NC05 138 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 H3BSA7 217 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 HLA-DPB1P04440 258 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 EPXP11678 715 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 CCL2P13500 99 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 GADD45AP24522 165 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 GRNP28799 593 aaKnown RBP13.96□□□□□ -0.17
SS18-211ENST00000578954 TMBIM6P55061 237 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 NAAAQ02083 359 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 SNAI3Q3KNW1 292 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 GPR107Q5VW38 600 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 ZNF676Q8N7Q3 588 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 PLPP7Q8NBV4 271 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 ZNF420Q8TAQ5 688 aaPredicted RBP13.96□□□□□ -0.17
SS18-211ENST00000578954 SPSB4Q96A44 273 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 APOBEC3DQ96AK3 386 aaPredicted RBP13.96□□□□□ -0.17
SS18-211ENST00000578954 WFIKKN1Q96NZ8 548 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 C1QTNF6Q9BXI9 259 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 OR10A2Q9H208 303 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 RGCCQ9H4X1 137 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 CDH20Q9HBT6 801 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 BRD7Q9NPI1 651 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 NPDC1Q9NQX5 325 aaPredicted RBP13.96□□□□□ -0.17
SS18-211ENST00000578954 ZNF391Q9UJN7 358 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 RALYQ9UKM9 306 aaKnown RBP13.96□□□□□ -0.17
SS18-211ENST00000578954 GTF2A1LQ9UNN4 478 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 HCFC1P51610 2035 aa13.96□□□□□ -0.17
SS18-211ENST00000578954 SPTBN1Q01082 2364 aaKnown RBP13.96□□□□□ -0.18
SS18-211ENST00000578954 IGHV2OR16-5A0A0B4J2B6 119 aa13.95□□□□□ -0.18
SS18-211ENST00000578954 LOC107986453A0A1B0GWG9 222 aa13.95□□□□□ -0.18
SS18-211ENST00000578954 ZNF701M0R085 212 aaPredicted RBP13.95□□□□□ -0.18
SS18-211ENST00000578954 XRCC2O43543 280 aa13.95□□□□□ -0.18
SS18-211ENST00000578954 GPX5O75715 221 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms