RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 AK6Q9Y3D8 172 aaKnown RBP9.76□□□□□ -0.85
CLK3-226ENST00000569406 MTCH2Q9Y6C9 303 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 FCMRO60667 390 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 SLC16A8O95907 504 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 IFNW1P05000 195 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 FGF5P12034 268 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 MAOAP21397 527 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 FAUP35544 74 aaKnown RBP9.76□□□□□ -0.85
CLK3-226ENST00000569406 PRPS1P60891 318 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 PMS2P11Q13670 270 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 CBFBQ13951 182 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 SFXN5Q8TD22 340 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 CCDC74AQ96AQ1 378 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 SMIM12Q96EX1 92 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 OR8D2Q9GZM6 311 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 CAPN10Q9HC96 672 aa9.76□□□□□ -0.85
CLK3-226ENST00000569406 MKKSQ9NPJ1 570 aaPredicted RBP9.76□□□□□ -0.85
CLK3-226ENST00000569406 A0A087WV62 115 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 TRBC2A0A5B9 178 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 H7C417 338 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 TRAPPC6AO75865 159 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 MELTFP08582 738 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 OR5G3P0C626 314 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 NR2F1P10589 423 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 EPCAMP16422 314 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 GPX2P18283 190 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 MC5RP33032 325 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 ACVR1BP36896 505 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 LIMS1P48059 325 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 PRLHRP49683 370 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 VASPP50552 380 aaPredicted RBP9.75□□□□□ -0.85
CLK3-226ENST00000569406 TAS2R38P59533 333 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 ERVFRD-1P60508 538 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 HSPB3Q12988 150 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 TMEM69Q5SWH9 247 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 PARS2Q7L3T8 475 aaKnown RBP9.75□□□□□ -0.85
CLK3-226ENST00000569406 NRMQ8IXM6 262 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 CHODLQ9H9P2 273 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 SOHLH2Q9NX45 425 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 ATG4BQ9Y4P1 393 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 MEIS3P1A6NDR6 274 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 PRAMEF25A6NGN4 478 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 IFNA21P01568 189 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 STATHP02808 62 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 PRRX1P54821 245 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 ELOBQ15370 118 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 MAPK14Q16539 360 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 C12orf73Q69YU5 71 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 TMEM183AQ8IXX5 376 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 POFUT1Q9H488 388 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 SLC2A8Q9NY64 477 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 C13orf42A0A1B0GVH6 325 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 FAM157AC9JC47 383 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 UMODP07911 640 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 HOXB2P14652 356 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 CEBPBP17676 345 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 GLRA1P23415 457 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 CD34P28906 385 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 OR12D2P58182 307 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 CNN3Q15417 329 aaKnown RBP9.75□□□□□ -0.85
CLK3-226ENST00000569406 AADACL3Q5VUY0 350 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 OR14L1PQ8NHC6 308 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 ZNF587Q96SQ5 575 aaPredicted RBP9.75□□□□□ -0.85
CLK3-226ENST00000569406 SLC6A7Q99884 636 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 POLR3KQ9Y2Y1 108 aaPredicted RBP9.75□□□□□ -0.85
CLK3-226ENST00000569406 CLDN16Q9Y5I7 305 aa9.75□□□□□ -0.85
CLK3-226ENST00000569406 SIRT4Q9Y6E7 314 aaPredicted RBP9.75□□□□□ -0.85
CLK3-226ENST00000569406 H1F0P07305 194 aaKnown RBP9.74□□□□□ -0.85
CLK3-226ENST00000569406 CSF1P09603 554 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 TDGF1P13385 188 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 CEACAM1P13688 526 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 SLC2A5P22732 501 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 PTGER1P34995 402 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 BUD31P41223 144 aaPredicted RBP9.74□□□□□ -0.85
CLK3-226ENST00000569406 MC1RQ01726 317 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 ZNF385BQ569K4 471 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 PODNL1Q6PEZ8 512 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 DRAM2Q6UX65 266 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 OR2L2Q8NH16 312 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 RNASEH2CQ8TDP1 164 aaKnown RBP9.74□□□□□ -0.85
CLK3-226ENST00000569406 SAT2Q96F10 170 aaPredicted RBP9.74□□□□□ -0.85
CLK3-226ENST00000569406 TMEM56Q96MV1 263 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 ZNF281Q9Y2X9 895 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 TMEM56-RWDD3S4R434 201 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 PAPLNO95428 1278 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 CATP04040 527 aaKnown RBP9.74□□□□□ -0.85
CLK3-226ENST00000569406 SLC35G6P0C7Q6 338 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 BCKDHBP21953 392 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 ELLP55199 621 aaPredicted RBP9.74□□□□□ -0.85
CLK3-226ENST00000569406 CLDN12P56749 244 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 GPR18Q14330 331 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 PLPP4Q5VZY2 271 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 VRK2Q86Y07 508 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 C1orf87Q8N0U7 546 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 ACBD7Q8N6N7 88 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 NEIL2Q969S2 332 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 RPUSD4Q96CM3 377 aaKnown RBP9.74□□□□□ -0.85
CLK3-226ENST00000569406 CIB3Q96Q77 187 aaPredicted RBP9.74□□□□□ -0.85
CLK3-226ENST00000569406 CST9LQ9H4G1 147 aa9.74□□□□□ -0.85
CLK3-226ENST00000569406 APMAPQ9HDC9 416 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms