RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 LIPHQ8WWY8 451 aa6□□□□□ -1.45
VPS4A-203ENST00000564399 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP6□□□□□ -1.45
VPS4A-203ENST00000564399 SPDL1Q96EA4 605 aa6□□□□□ -1.45
VPS4A-203ENST00000564399 MAELQ96JY0 434 aaKnown RBP6□□□□□ -1.45
VPS4A-203ENST00000564399 OR52B2Q96RD2 323 aa6□□□□□ -1.45
VPS4A-203ENST00000564399 NKX3-1Q99801 234 aaPredicted RBP6□□□□□ -1.45
VPS4A-203ENST00000564399 THAP1Q9NVV9 213 aa6□□□□□ -1.45
VPS4A-203ENST00000564399 RPUSD1Q9UJJ7 312 aaKnown RBP6□□□□□ -1.45
VPS4A-203ENST00000564399 HIF3AQ9Y2N7 669 aa6□□□□□ -1.45
VPS4A-203ENST00000564399 POLR1DQ9Y2S0 133 aa6□□□□□ -1.45
VPS4A-203ENST00000564399 MED31Q9Y3C7 131 aa6□□□□□ -1.45
VPS4A-203ENST00000564399 hCG_1807616A0A1W2PRN6 198 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 A6NLC8 198 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 XKRYO14609 159 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 RER1O15258 196 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 PEX14O75381 377 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 IGF2P01344 180 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 TSPAN19P0C672 248 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 CD28P10747 220 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 IFI30P13284 250 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 CA6P23280 308 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 SAA4P35542 130 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 MSX2P35548 267 aaPredicted RBP5.99□□□□□ -1.45
VPS4A-203ENST00000564399 DLX1P56177 255 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 MPP2Q14168 576 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 C11orf91Q3C1V1 193 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 CCDC92Q53HC0 331 aaPredicted RBP5.99□□□□□ -1.45
VPS4A-203ENST00000564399 BLOC1S3Q6QNY0 202 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 NDUFA11Q86Y39 141 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 FAM90A1Q86YD7 464 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 MICU2Q8IYU8 434 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 FGFRL1Q8N441 504 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 PNKDQ8N490 385 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 ANKRD42Q8N9B4 389 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 DTX3Q8N9I9 347 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 OR51G2Q8NGK0 314 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 OR51A7Q8NH64 312 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 SPRYD4Q8WW59 207 aaPredicted RBP5.99□□□□□ -1.45
VPS4A-203ENST00000564399 TAMM41Q96BW9 452 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 SSX3Q99909 188 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 NPFFR1Q9GZQ6 430 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 FAM234AQ9H0X4 552 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 RANBP3Q9H6Z4 567 aaPredicted RBP5.99□□□□□ -1.45
VPS4A-203ENST00000564399 RAB18Q9NP72 206 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 SSU72Q9NP77 194 aaKnown RBP5.99□□□□□ -1.45
VPS4A-203ENST00000564399 C1orf123Q9NWV4 160 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 CCDC167Q9P0B6 97 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 RIMS3Q9UJD0 308 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 AURKCQ9UQB9 309 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 SH3GLB1Q9Y371 365 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 NOP16Q9Y3C1 178 aaKnown RBP5.99□□□□□ -1.45
VPS4A-203ENST00000564399 MAB21L2Q9Y586 359 aa5.99□□□□□ -1.45
VPS4A-203ENST00000564399 TENM2Q9NT68 2774 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 IGHV3OR15-7A0A075B7D8 119 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 TRAV27A0A087WT01 109 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 TRBV5-3A0A0A0MS03 114 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 A0A1B0GWJ7 208 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 WI2-2373I1.2A0A1W2PRP0 233 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 A0A1W2PRX2 142 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 SHOX2O60902 331 aaPredicted RBP5.98□□□□□ -1.45
VPS4A-203ENST00000564399 FCN3O75636 299 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 OR5F1O95221 314 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 PPP1R3DO95685 299 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 GRPP07492 148 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 CTLA4P16410 223 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 RPL4P36578 427 aaKnown RBP5.98□□□□□ -1.45
VPS4A-203ENST00000564399 CENPAP49450 140 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 LSM6P62312 80 aaKnown RBP5.98□□□□□ -1.45
VPS4A-203ENST00000564399 ECH1Q13011 328 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 MALLQ13021 153 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 PIN1Q13526 163 aaPredicted RBP5.98□□□□□ -1.45
VPS4A-203ENST00000564399 GK2Q14410 553 aaPredicted RBP5.98□□□□□ -1.45
VPS4A-203ENST00000564399 ZNF826PQ6ZT77 177 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 PGAP1Q75T13 922 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 MRPL21Q7Z2W9 205 aaKnown RBP5.98□□□□□ -1.45
VPS4A-203ENST00000564399 MAVSQ7Z434 540 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 ZSCAN2Q7Z7L9 614 aaPredicted RBP5.98□□□□□ -1.45
VPS4A-203ENST00000564399 FUNDC1Q8IVP5 155 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 LRRC75AQ8NAA5 344 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 BEND2Q8NDZ0 799 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 SLC7A13Q8TCU3 470 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 LRRC8CQ8TDW0 803 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 RASSF5Q8WWW0 418 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 RORBQ92753 470 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 SLCO4A1Q96BD0 722 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 KCTD12Q96CX2 325 aaKnown RBP5.98□□□□□ -1.45
VPS4A-203ENST00000564399 BPIFA2Q96DR5 249 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 CCL13Q99616 98 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 CITED2Q99967 270 aaPredicted RBP5.98□□□□□ -1.45
VPS4A-203ENST00000564399 B9D2Q9BPU9 175 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 SLC22A4Q9H015 551 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 KAAG1Q9UBP8 84 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 GRHPRQ9UBQ7 328 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 ATPIF1Q9UII2 106 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 RPS6KA6Q9UK32 745 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 COA3Q9Y2R0 106 aaPredicted RBP5.98□□□□□ -1.45
VPS4A-203ENST00000564399 GMEB1Q9Y692 573 aa5.98□□□□□ -1.45
VPS4A-203ENST00000564399 TEX13CA0A0J9YWL9 993 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 A0A1B0GW55 424 aa5.97□□□□□ -1.45
VPS4A-203ENST00000564399 PRSS37A4D1T9 235 aa5.97□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms