RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 OR13G1Q8NGZ3 307 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 OR51F2Q8NH61 342 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 SPTSSAQ969W0 71 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 SLCO4A1Q96BD0 722 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 ZNF799Q96GE5 643 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 OR2V2Q96R30 315 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 ZNF556Q9HAH1 456 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 CMC2Q9NRP2 79 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 CENPMQ9NSP4 180 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 TMEM106BQ9NUM4 274 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 UBAP1Q9NZ09 502 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 IL19Q9UHD0 177 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 PPP1R3CQ9UQK1 317 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 N6AMT1Q9Y5N5 214 aa13.24□□□□□ -0.29
VPS39-203ENST00000561797 IGHV3-64DA0A0J9YX35 117 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 RNF212BA8MTL3 300 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 IQCF6A8MYZ5 107 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 PHF1O43189 567 aaPredicted RBP13.23□□□□□ -0.29
VPS39-203ENST00000561797 DEAF1O75398 565 aaPredicted RBP13.23□□□□□ -0.29
VPS39-203ENST00000561797 IGHV2-5P01817 119 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 ANPEPP15144 967 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 PCMT1P22061 227 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 MALLQ13021 153 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 GK2Q14410 553 aaPredicted RBP13.23□□□□□ -0.29
VPS39-203ENST00000561797 GINS1Q14691 196 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 SPATC1Q76KD6 591 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 CXXC5Q7LFL8 322 aaKnown RBP13.23□□□□□ -0.29
VPS39-203ENST00000561797 ZNF283Q8N7M2 679 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 SLAMF6Q96DU3 332 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 COPS4Q9BT78 406 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 DNAJB9Q9UBS3 223 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 NPTNQ9Y639 398 aa13.23□□□□□ -0.29
VPS39-203ENST00000561797 F5H5P2 479 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 MLNRO43193 412 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 PLPP2O43688 288 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 TIPRLO75663 272 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 HLA-DPB1P04440 258 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 OSMP13725 252 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 SELEP16581 610 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 PRKXP51817 358 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 SRSF2Q01130 221 aaKnown RBP13.22□□□□□ -0.29
VPS39-203ENST00000561797 EIF2B1Q14232 305 aaKnown RBP13.22□□□□□ -0.29
VPS39-203ENST00000561797 SLC27A4Q6P1M0 643 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 FAHD2BQ6P2I3 314 aaPredicted RBP13.22□□□□□ -0.29
VPS39-203ENST00000561797 PGAP1Q75T13 922 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 MRPL21Q7Z2W9 205 aaKnown RBP13.22□□□□□ -0.29
VPS39-203ENST00000561797 ERI1Q8IV48 349 aaKnown RBP13.22□□□□□ -0.29
VPS39-203ENST00000561797 PAPD5Q8NDF8 572 aaKnown RBP13.22□□□□□ -0.29
VPS39-203ENST00000561797 OR6N2Q8NGY6 317 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 ZNF420Q8TAQ5 688 aaPredicted RBP13.22□□□□□ -0.29
VPS39-203ENST00000561797 FAHD2AQ96GK7 314 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 SLC30A2Q9BRI3 323 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 OR51V1Q9H2C8 321 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 DDX28Q9NUL7 540 aaKnown RBP13.22□□□□□ -0.29
VPS39-203ENST00000561797 TMEM100Q9NV29 134 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 PCDHB10Q9UN67 800 aa13.22□□□□□ -0.29
VPS39-203ENST00000561797 TRAV20A0A0B4J274 112 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 C5orf63A6NC05 138 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 PRR23D1E9PI22 279 aaPredicted RBP13.21□□□□□ -0.29
VPS39-203ENST00000561797 IGHV2-70P01814 119 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 PRR23D2P0DMB1 279 aaPredicted RBP13.21□□□□□ -0.29
VPS39-203ENST00000561797 SLC2A1P11166 492 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 ANXA8P13928 327 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 PAICSP22234 425 aaKnown RBP13.21□□□□□ -0.29
VPS39-203ENST00000561797 ANOS1P23352 680 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 SRP9P49458 86 aaKnown RBP13.21□□□□□ -0.29
VPS39-203ENST00000561797 BLVRAP53004 296 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 PCK2Q16822 640 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 SNAI3Q3KNW1 292 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 TEX30Q5JUR7 227 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 LINC01590Q5TEZ4 76 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 DRAM2Q6UX65 266 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 OR2AE1Q8NHA4 323 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 SPRYD4Q8WW59 207 aaPredicted RBP13.21□□□□□ -0.29
VPS39-203ENST00000561797 MEGF10Q96KG7 1140 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 INTS14Q96SY0 518 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 GCM1Q9NP62 436 aa13.21□□□□□ -0.29
VPS39-203ENST00000561797 ZNF878C9JN71 531 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 GLCEO94923 617 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 GSTT1P30711 240 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 OTX1P32242 354 aaPredicted RBP13.2□□□□□ -0.3
VPS39-203ENST00000561797 RASSF2P50749 326 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 LCN2P80188 198 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 CDK5Q00535 292 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 ZNF92Q03936 586 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 GLYATL3Q5SZD4 288 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 TMEM236Q5W0B7 351 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 PLBD1Q6P4A8 553 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 DPY19L4Q7Z388 723 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 ST7LQ8TDW4 575 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 ZMYND19Q96E35 227 aaPredicted RBP13.2□□□□□ -0.3
VPS39-203ENST00000561797 SIGLEC11Q96RL6 698 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 KCNJ15Q99712 375 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 NTN4Q9HB63 628 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 KIF17Q9P2E2 1029 aa13.2□□□□□ -0.3
VPS39-203ENST00000561797 GGT3PA6NGU5 568 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 TMEM178BH3BS89 294 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 TBX1O43435 398 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 ATP5HO75947 161 aa13.19□□□□□ -0.3
VPS39-203ENST00000561797 ZNF205O95201 554 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms