RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 OR51M1Q9H341 326 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 KIR3DX1Q9H7L2 352 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 SEC61A2Q9H9S3 476 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 RPS10P5Q9NQ39 176 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 PRMT8Q9NR22 394 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 DZANK1Q9NVP4 752 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 DUX4Q9UBX2 424 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 CACFD1Q9UGQ2 172 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 ATXN7L1Q9ULK2 861 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 RHBDD3Q9Y3P4 386 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 ZDBF2Q9HCK1 2354 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 PHF3Q92576 2039 aaKnown RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 TMEM212A6NML5 194 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 DBX1A6NMT0 343 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 RAB27BO00194 218 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 AK1P00568 194 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 IGHV2-5P01817 119 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 CD5P06127 495 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 CELA2BP08218 269 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 SNRNP70P08621 437 aaKnown RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 TPT1P13693 172 aaKnown RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 SELLP14151 372 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 AGAP20933 346 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 MAOAP21397 527 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 UNC119Q13432 240 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 ZNF74Q16587 644 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 KRBOX4Q5JUW0 171 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 FBXO46Q6PJ61 603 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 TRAPPC6BQ86SZ2 158 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 COMMD2Q86X83 199 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 FAM24BQ8N5W8 94 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 AKR7LQ8NHP1 331 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 SLC37A2Q8TED4 501 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 C15orf40Q8WUR7 153 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 TMEM230Q96A57 120 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 INTS12Q96CB8 462 aaKnown RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 BSCL2Q96G97 398 aaPredicted RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 MARS2Q96GW9 593 aaKnown RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 STACQ99469 402 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 NICN1Q9BSH3 213 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 MRI1Q9BV20 369 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 NUDT9Q9BW91 350 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 NRSN2Q9GZP1 204 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 COMMD4Q9H0A8 199 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 PTGES2Q9H7Z7 377 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 PRTFDC1Q9NRG1 225 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 MRPL22Q9NWU5 206 aaKnown RBP4.34□□□□□ -1.71
LIMA1-214ENST00000552783 AMDHD2Q9Y303 409 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 NBEAQ8NFP9 2946 aa4.34□□□□□ -1.71
LIMA1-214ENST00000552783 A0A087WV62 115 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 NPIPB9F8W1W9 429 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 LDLRAD4O15165 306 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 MBTPS2O43462 519 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 HCRTR2O43614 444 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 MED6O75586 246 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 SEMA4FO95754 770 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 TNFP01375 233 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 LINC00271P0C7V0 271 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 THEGLP0DJG4 465 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 CT45A8P0DMV1 189 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 CT45A9P0DMV2 189 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 HLA-GP17693 338 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 COL9A1P20849 921 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 TSFMP43897 325 aaKnown RBP4.34□□□□□ -1.72
LIMA1-214ENST00000552783 EIF1AXP47813 144 aaKnown RBP4.34□□□□□ -1.72
LIMA1-214ENST00000552783 NPY4RP50391 375 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 RAB5BP61020 215 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 BTG2P78543 158 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 NFATC4Q14934 902 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 EBPQ15125 230 aaKnown RBP4.34□□□□□ -1.72
LIMA1-214ENST00000552783 ANKRD55Q3KP44 614 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 CT45A2Q5DJT8 189 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 ADAM5Q6NVV9 412 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF584Q8IVC4 421 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 ABCA7Q8IZY2 2146 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 EDAQ92838 391 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 TAAR8Q969N4 342 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 SLC25A44Q96H78 314 aaPredicted RBP4.34□□□□□ -1.72
LIMA1-214ENST00000552783 UPB1Q9UBR1 384 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 RFNGQ9Y644 331 aa4.34□□□□□ -1.72
LIMA1-214ENST00000552783 TRBV6-7A0A0A0MS04 114 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 A0A1W2PPE2 198 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 XKRYO14609 159 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ATXN7O15265 892 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF217O75362 1048 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 C1QL1O75973 258 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 S100A6P06703 90 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 FOLR2P14207 255 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 CTHP32929 405 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 GPX4P36969 197 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 OR1D4P47884 311 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SUPT4H1P63272 117 aaKnown RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ADAM8P78325 824 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 RAB32Q13637 225 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 SLC17A1Q14916 467 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 KIR2DS3Q14952 304 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 TOMM34Q15785 309 aaPredicted RBP4.33□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF260Q3ZCT1 412 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 KLHL26Q53HC5 615 aa4.33□□□□□ -1.72
LIMA1-214ENST00000552783 AWAT1Q58HT5 328 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms