RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 MPPED2Q15777 294 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 FRMPD2BQ6IN97 320 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 SLC8B1Q6J4K2 584 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 TMEM107Q6UX40 140 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 RNF175Q8N4F7 328 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 ZADH2Q8N4Q0 377 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 EID2Q8N6I1 236 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 OR4F15Q8NGB8 312 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 OR2G2Q8NGZ5 317 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 OR6X1Q8NH79 312 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 RAB3IL1Q8TBN0 382 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 OR2M2Q96R28 347 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 CCDC77Q9BR77 488 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 GPR61Q9BZJ8 451 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 CACNG2Q9Y698 323 aa3.24□□□□□ -1.89
LIMA1-205ENST00000550592 DIDO1Q9BTC0 2240 aaKnown RBP3.24□□□□□ -1.89
LIMA1-205ENST00000550592 DOCK9Q9BZ29 2069 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 A0A1B0GTQ1 180 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 SOX15O60248 233 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 APODP05090 189 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 HNRNPH3P31942 346 aaKnown RBP3.23□□□□□ -1.89
LIMA1-205ENST00000550592 ATP5C1P36542 298 aaKnown RBP3.23□□□□□ -1.89
LIMA1-205ENST00000550592 CSNK1DP48730 415 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 UGT2B15P54855 530 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 C21orf59P57076 290 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 ENPEPQ07075 957 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 UNC119Q13432 240 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 FZD2Q14332 565 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 LRRC10Q5BKY1 277 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 TMEM135Q86UB9 458 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 LHFPL3Q86UP9 236 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 THOC6Q86W42 341 aaKnown RBP3.23□□□□□ -1.89
LIMA1-205ENST00000550592 CMTM8Q8IZV2 173 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 PUSL1Q8N0Z8 303 aaKnown RBP3.23□□□□□ -1.89
LIMA1-205ENST00000550592 OR2G3Q8NGZ4 309 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 PLPPR1Q8TBJ4 325 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 MCOLN3Q8TDD5 553 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 BLOC1S5Q8TDH9 187 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 GPR151Q8TDV0 419 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 API5Q9BZZ5 524 aaKnown RBP3.23□□□□□ -1.89
LIMA1-205ENST00000550592 NRBP2Q9NSY0 501 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 PSMC3IPQ9P2W1 217 aaPredicted RBP3.23□□□□□ -1.89
LIMA1-205ENST00000550592 NUP50Q9UKX7 468 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 STARD10Q9Y365 291 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 UBIAD1Q9Y5Z9 338 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 MYO16Q9Y6X6 1858 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 ABCA4P78363 2273 aa3.23□□□□□ -1.89
LIMA1-205ENST00000550592 MYH9P35579 1960 aaKnown RBP3.23□□□□□ -1.89
LIMA1-205ENST00000550592 ZNF638Q14966 1978 aaKnown RBP3.22□□□□□ -1.89
LIMA1-205ENST00000550592 KIAA1549LQ6ZVL6 1849 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 TNFSF15O95150 251 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 ALDOBP05062 364 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 ZNF43P17038 809 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 TNNI1P19237 187 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 MDKP21741 143 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-205ENST00000550592 CHMLP26374 656 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 GABRR2P28476 465 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 SUB1P53999 127 aaKnown RBP eCLIP3.22□□□□□ -1.89
LIMA1-205ENST00000550592 GPX6P59796 221 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 MRPS22P82650 360 aaKnown RBP3.22□□□□□ -1.89
LIMA1-205ENST00000550592 PPP1R7Q15435 360 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 TGFBIQ15582 683 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 CNIH2Q6PI25 160 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 KRTAP11-1Q8IUC1 163 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 MKXQ8IYA7 352 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 CEP112Q8N8E3 955 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 SPATA4Q8NEY3 305 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 NUP58Q9BVL2 599 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 ILKAPQ9H0C8 392 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-205ENST00000550592 BOLA2Q9H3K6 86 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 DCAF16Q9NXF7 216 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 SLC25A37Q9NYZ2 338 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 NUFIP1Q9UHK0 495 aaKnown RBP3.22□□□□□ -1.89
LIMA1-205ENST00000550592 PACSIN2Q9UNF0 486 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-205ENST00000550592 NUP210Q8TEM1 1887 aaPredicted RBP3.22□□□□□ -1.89
LIMA1-205ENST00000550592 NUMA1Q14980 2115 aa3.22□□□□□ -1.89
LIMA1-205ENST00000550592 IGKV1D-13A0A0B4J2D9 117 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 NKX2-6A6NCS4 301 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 PEX7O00628 323 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 GOSR2O14653 212 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 GKN3PP0CG01 181 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 IGKV1-13P0DP09 117 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 TROVE2P10155 538 aaKnown RBP eCLIP3.21□□□□□ -1.9
LIMA1-205ENST00000550592 LIPCP11150 499 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 MGMTP16455 207 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 LHX2P50458 406 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 ZNF133P52736 654 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-205ENST00000550592 SGCAQ16586 387 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 VPS26BQ4G0F5 336 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 VAX1Q5SQQ9 334 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 ARMC12Q5T9G4 340 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 LCN12Q6JVE5 192 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 METAP1DQ6UB28 335 aaPredicted RBP3.21□□□□□ -1.9
LIMA1-205ENST00000550592 C19orf35Q6ZS72 473 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 ZNF621Q6ZSS3 439 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 B3GNT7Q8NFL0 401 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 PIBF1Q8WXW3 757 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 RNF185Q96GF1 192 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 CATSPER2Q96P56 530 aa3.21□□□□□ -1.9
LIMA1-205ENST00000550592 RARRES2Q99969 163 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms