RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ZCCHC4Q9H5U6 513 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 TEX51A0A1B0GUA7 166 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 SMCO3A2RU48 225 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 KLRC4-KLRK1H3BQV0 150 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 CRYZL1O95825 349 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 DMWDQ09019 674 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 FUT7Q11130 342 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 LTC4SQ16873 150 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 C17orf107Q6ZR85 190 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 CREB3L2Q70SY1 520 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 TMEM178AQ8NBL3 297 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 SEMA6DQ8NFY4 1073 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 V9GYH0 126 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 TK1P04183 234 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 FAHP16930 419 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 ACAA2P42765 397 aaKnown RBP14.63□□□□□ -0.07
CUX1-213ENST00000549414 BAMBIQ13145 260 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 PCK2Q16822 640 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 FBXW12Q6X9E4 464 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 ANKRD36A6QL64 1941 aa14.63□□□□□ -0.07
CUX1-213ENST00000549414 SLC22A23A1A5C7 686 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 ANKRD33BA6NCL7 494 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 ZNF814B7Z6K7 855 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 TSPAN15O95858 294 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 TPT1P13693 172 aaKnown RBP14.62□□□□□ -0.07
CUX1-213ENST00000549414 ATG4DQ86TL0 474 aaPredicted RBP14.62□□□□□ -0.07
CUX1-213ENST00000549414 ZFAND1Q8TCF1 268 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 GLYATL2Q8WU03 294 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 UPRTQ96BW1 309 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 TM4SF19Q96DZ7 209 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 PCED1AQ9H1Q7 454 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 RGCCQ9H4X1 137 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 MRM2Q9UI43 246 aaKnown RBP14.62□□□□□ -0.07
CUX1-213ENST00000549414 KLK10O43240 276 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 DHHO43323 396 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 PMS2P2O95744 297 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 IGHA1P01876 353 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 LUMP51884 338 aaPredicted RBP14.62□□□□□ -0.07
CUX1-213ENST00000549414 DYRK1AQ13627 763 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 GPR157Q5UAW9 335 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 DMKNQ6E0U4 476 aaPredicted RBP14.62□□□□□ -0.07
CUX1-213ENST00000549414 OGFOD3Q6PK18 319 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 TMEM91Q6ZNR0 172 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 RFLNBQ8N5W9 214 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 LSMEM1Q8N8F7 131 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 OR10AC1Q8NH08 325 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 OR1S1Q8NH92 325 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 AKR7LQ8NHP1 331 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 OR5V1Q9UGF6 321 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 KCNE5Q9UJ90 142 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 CHRM2P08172 466 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 PPP3CBP16298 524 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 MMP15P51511 669 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 RBPJQ06330 500 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 MESTQ5EB52 335 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 WIPI1Q5MNZ9 446 aaPredicted RBP14.62□□□□□ -0.07
CUX1-213ENST00000549414 NAXDQ8IW45 347 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 ZNF709Q8N972 641 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 ARL11Q969Q4 196 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 TMEM74BQ9NUR3 256 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 VWA8A3KMH1 1905 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 NOTCH2Q04721 2471 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 SLC17A2O00624 439 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 SLC34A2O95436 690 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 MSL3P1P0C860 447 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 CCL4P13236 92 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 CLDN15P56746 228 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 CDONQ4KMG0 1287 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 CMBLQ96DG6 245 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 VWCEQ96DN2 955 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 OCIAD1Q9NX40 245 aa14.62□□□□□ -0.07
CUX1-213ENST00000549414 RPA2P15927 270 aa14.61□□□□□ -0.07
CUX1-213ENST00000549414 RBM39Q14498 530 aaKnown RBP14.61□□□□□ -0.07
CUX1-213ENST00000549414 CUL9Q8IWT3 2517 aa14.61□□□□□ -0.07
CUX1-213ENST00000549414 PYCARD-AS1I3L0S3 204 aa14.61□□□□□ -0.07
CUX1-213ENST00000549414 LIMS1P48059 325 aa14.61□□□□□ -0.07
CUX1-213ENST00000549414 HNF4GQ14541 408 aa14.61□□□□□ -0.07
CUX1-213ENST00000549414 ZNF79Q15937 498 aa14.61□□□□□ -0.07
CUX1-213ENST00000549414 IAH1Q2TAA2 248 aaPredicted RBP14.61□□□□□ -0.07
CUX1-213ENST00000549414 RHBDD2Q6NTF9 364 aa14.61□□□□□ -0.07
CUX1-213ENST00000549414 HRH1P35367 487 aa14.61□□□□□ -0.07
CUX1-213ENST00000549414 OR5AS1Q8N127 324 aa14.61□□□□□ -0.07
CUX1-213ENST00000549414 ZADH2Q8N4Q0 377 aa14.61□□□□□ -0.07
CUX1-213ENST00000549414 APH1AQ96BI3 265 aa14.61□□□□□ -0.07
CUX1-213ENST00000549414 EFEMP2O95967 443 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 UBBP0CG47 229 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 RAC2P15153 192 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 OR52W1Q6IF63 320 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 SUMF1Q8NBK3 374 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 TINAGL1Q9GZM7 467 aaPredicted RBP14.6□□□□□ -0.07
CUX1-213ENST00000549414 MCRIP1C9JLW8 97 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 ANGPTL7O43827 346 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 OR5L1Q8NGL2 311 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 NEUROG3Q9Y4Z2 214 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 SKP2Q13309 424 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 DYNLRB1Q9NP97 96 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 PLA2G3Q9NZ20 509 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 HDGFL3Q9Y3E1 203 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 ANKRD34BA5PLL1 514 aa14.6□□□□□ -0.07
CUX1-213ENST00000549414 XRCC3O43542 346 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms