RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 GIPP09681 153 aaPredicted RBP14.07□□□□□ -0.16
CUX1-211ENST00000546411 MSR1P21757 451 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 GALP22466 123 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 CPT2P23786 658 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 CYB561P49447 251 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 ATP1B3P54709 279 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 CNN3Q15417 329 aaKnown RBP14.07□□□□□ -0.16
CUX1-211ENST00000546411 GSG1Q2KHT4 349 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 ZNF695Q8IW36 515 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 ZSCAN1Q8NBB4 408 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 SUMF1Q8NBK3 374 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 OR10R2Q8NGX6 335 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 ROBO4Q8WZ75 1007 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 NINJ1Q92982 152 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 ARL11Q969Q4 196 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 SLCO5A1Q9H2Y9 848 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 B3GNT2Q9NY97 397 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 TAS2R5Q9NYW4 299 aa14.07□□□□□ -0.16
CUX1-211ENST00000546411 TMEM184BQ9Y519 407 aaPredicted RBP14.07□□□□□ -0.16
CUX1-211ENST00000546411 A0A1B0GUH1 482 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 TSPAN15O95858 294 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 ADRB1P08588 477 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 IAH1Q2TAA2 248 aaPredicted RBP14.06□□□□□ -0.16
CUX1-211ENST00000546411 CPT1CQ8TCG5 803 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 SLC25A43Q8WUT9 341 aaPredicted RBP14.06□□□□□ -0.16
CUX1-211ENST00000546411 SARGQ9BW04 601 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 C12orf49Q9H741 205 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 SF3B6Q9Y3B4 125 aaKnown RBP14.06□□□□□ -0.16
CUX1-211ENST00000546411 OR6C76A6NM76 312 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 B4GALT1P15291 398 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 RPS18P62269 152 aaKnown RBP14.06□□□□□ -0.16
CUX1-211ENST00000546411 MRPL49Q13405 166 aaKnown RBP14.06□□□□□ -0.16
CUX1-211ENST00000546411 PDCD1Q15116 288 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 PCK2Q16822 640 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 OGFOD3Q6PK18 319 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 OR1J2Q8NGS2 313 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 RBPMSQ93062 196 aaKnown RBP14.06□□□□□ -0.16
CUX1-211ENST00000546411 ARPC5LQ9BPX5 153 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 LOC102725191A0A1B0GVB3 256 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 OR5H14A6NHG9 310 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 LGALS8O00214 317 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 TNFSF11O14788 317 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 NXPH3O95157 252 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 RPA2P15927 270 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 NME2P22392 152 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 EFNA3P52797 238 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 Q7L0L9 218 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 C9orf40Q8IXQ3 194 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 APOBEC4Q8WW27 367 aaKnown RBP14.06□□□□□ -0.16
CUX1-211ENST00000546411 RGCCQ9H4X1 137 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 ZCCHC4Q9H5U6 513 aa14.06□□□□□ -0.16
CUX1-211ENST00000546411 BOKQ9UMX3 212 aaPredicted RBP14.06□□□□□ -0.16
CUX1-211ENST00000546411 A6NCN8 305 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 MKXQ8IYA7 352 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 THOC3Q96J01 351 aaKnown RBP14.05□□□□□ -0.16
CUX1-211ENST00000546411 RADILQ96JH8 1075 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 MRGPRX4Q96LA9 322 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 MYOTQ9UBF9 498 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 MTCH2Q9Y6C9 303 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 DOCK9Q9BZ29 2069 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 GVQW1Q8N7I0 195 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 CADM4Q8NFZ8 388 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 AKR7LQ8NHP1 331 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 RNF128Q8TEB7 428 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 SDHCQ99643 169 aaPredicted RBP14.05□□□□□ -0.16
CUX1-211ENST00000546411 TSC2P49815 1807 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 CTAG2O75638 210 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 PATE4P0C8F1 98 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 RAB6AP20340 208 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 SELENOPP49908 381 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 PGAP1Q75T13 922 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 SLC51BQ86UW2 128 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 ADGRG3Q86Y34 549 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 LIPHQ8WWY8 451 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 RRNAD1Q96FB5 475 aaKnown RBP14.05□□□□□ -0.16
CUX1-211ENST00000546411 ICAM5Q9UMF0 924 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 ZNF175Q9Y473 711 aa14.05□□□□□ -0.16
CUX1-211ENST00000546411 OR4C45A6NMZ5 311 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 PLPP3O14495 311 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 PRKACBP22694 351 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 APLNRP35414 380 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 TAS2R46P59540 309 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 INPP5JQ15735 1006 aaPredicted RBP14.04□□□□□ -0.16
CUX1-211ENST00000546411 ZBTB37Q5TC79 503 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 TEX261Q6UWH6 196 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 OR52N4Q8NGI2 321 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 ST8SIA4Q92187 359 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 CDH20Q9HBT6 801 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 U3KQ87 197 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 A0A0D9SG52 128 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 CHRM2P08172 466 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 ICAM2P13598 275 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 SPINK2P20155 84 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 EPHA4P54764 986 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 IKZF1Q13422 519 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 KIF26BQ2KJY2 2108 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 RFPL4BQ6ZWI9 263 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 SLAMF9Q96A28 289 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 AMELYQ99218 206 aa14.04□□□□□ -0.16
CUX1-211ENST00000546411 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.04□□□□□ -0.163e-6■■□□□ 13.5
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms