RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 FBXO32Q969P5 355 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 GALNT14Q96FL9 552 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 RNF157Q96PX1 679 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 PKIBQ9C010 78 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 MAPK8IP3Q9UPT6 1336 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 ANKRD11Q6UB99 2663 aaPredicted RBP2.06□□□□□ -2.08
CD44-233ENST00000531141 SETXQ7Z333 2677 aaKnown RBP2.06□□□□□ -2.08
CD44-233ENST00000531141 POLR3AO14802 1390 aaPredicted RBP2.06□□□□□ -2.08
CD44-233ENST00000531141 CFAP54Q96N23 3096 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 USP54Q70EL1 1684 aa2.06□□□□□ -2.08
CD44-233ENST00000531141 LAMB4A4D0S4 1761 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 KIF26AQ9ULI4 1882 aaPredicted RBP2.05□□□□□ -2.08
CD44-233ENST00000531141 DICER1Q9UPY3 1922 aaKnown RBP2.05□□□□□ -2.08
CD44-233ENST00000531141 DOCK8Q8NF50 2099 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 USP34Q70CQ2 3546 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 ZDBF2Q9HCK1 2354 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 IGKV1D-17A0A075B6S4 117 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 RRP8O43159 456 aaKnown RBP2.05□□□□□ -2.08
CD44-233ENST00000531141 ZNF207O43670 478 aaKnown RBP2.05□□□□□ -2.08
CD44-233ENST00000531141 OR56A5P0C7T3 313 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 C1GALT1C1LP0DN25 315 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 WARSP23381 471 aaKnown RBP2.05□□□□□ -2.08
CD44-233ENST00000531141 DTYMKP23919 212 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 ACLYP53396 1101 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 ATP5IP56385 69 aaPredicted RBP2.05□□□□□ -2.08
CD44-233ENST00000531141 ACTR3P61158 418 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 CHRFAM7AQ494W8 412 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 SMUG1Q53HV7 270 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 ZNF684Q5T5D7 378 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 NANOGNBQ7Z5D8 188 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 CDR2LQ86X02 465 aaPredicted RBP2.05□□□□□ -2.08
CD44-233ENST00000531141 OR2A1Q8NGT9 310 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 COQ8AQ8NI60 647 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 ZNF502Q8TBZ5 544 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 SLC7A13Q8TCU3 470 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 SLC2A14Q8TDB8 520 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 MRGPRFQ96AM1 343 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 CCDC126Q96EE4 140 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 L3HYPDHQ96EM0 354 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 CDX2Q99626 313 aaPredicted RBP2.05□□□□□ -2.08
CD44-233ENST00000531141 OSBPL11Q9BXB4 747 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 DDX19AQ9NUU7 478 aaKnown RBP2.05□□□□□ -2.08
CD44-233ENST00000531141 CSDC2Q9Y534 153 aaKnown RBP2.05□□□□□ -2.08
CD44-233ENST00000531141 SPTBN4Q9H254 2564 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 INSRP06213 1382 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 EIF3AQ14152 1382 aaKnown RBP2.05□□□□□ -2.08
CD44-233ENST00000531141 PALLDQ8WX93 1383 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 ZFHX4Q86UP3 3567 aa2.05□□□□□ -2.08
CD44-233ENST00000531141 A0A0U1RQV1 116 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 SGK1O00141 431 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 GCM2O75603 506 aaPredicted RBP2.04□□□□□ -2.08
CD44-233ENST00000531141 NUP155O75694 1391 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 ABCC6O95255 1503 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 CLIC3O95833 236 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 NSD2O96028 1365 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 IGKV1-17P01599 117 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 DCNP07585 359 aaKnown RBP2.04□□□□□ -2.08
CD44-233ENST00000531141 OR5H8P0DN80 308 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 DCKP27707 260 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 SLC25A11Q02978 314 aaKnown RBP2.04□□□□□ -2.08
CD44-233ENST00000531141 CDH17Q12864 832 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 QPRTQ15274 297 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 RGNQ15493 299 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 KRTAP13-2Q52LG2 175 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 XKR4Q5GH76 650 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 DNLZQ5SXM8 178 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 PRMT9Q6P2P2 845 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 DNAJC24Q6P3W2 148 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 FBXW12Q6X9E4 464 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 CERS6Q6ZMG9 384 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 WDFY4Q6ZS81 3184 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 FAM228AQ86W67 206 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 TIAM2Q8IVF5 1701 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 MYOCDQ8IZQ8 938 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 ADAMTSL1Q8N6G6 1762 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 FBXL13Q8NEE6 735 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 ATP5SQ99766 215 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 LZTS2Q9BRK4 669 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 YTHDC2Q9H6S0 1430 aaKnown RBP2.04□□□□□ -2.08
CD44-233ENST00000531141 C5orf42Q9H799 3197 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 EPG5Q9HCE0 2579 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 FGF20Q9NP95 211 aaPredicted RBP2.04□□□□□ -2.08
CD44-233ENST00000531141 MARCOQ9UEW3 520 aaPredicted RBP2.04□□□□□ -2.08
CD44-233ENST00000531141 IFT172Q9UG01 1749 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 PISDQ9UG56 409 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 ST3GAL6Q9Y274 331 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 IKBKGQ9Y6K9 419 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 HTTP42858 3142 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 CHD6Q8TD26 2715 aa2.04□□□□□ -2.08
CD44-233ENST00000531141 UBR3Q6ZT12 1888 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 TAF1LQ8IZX4 1826 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 C4AP0C0L4 1744 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 C4BP0C0L5 1744 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 E9PCH4 1651 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 C5P01031 1676 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 QRICH2Q9H0J4 1663 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 CFAP47Q6ZTR5 3102 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 ANKRD50Q9ULJ7 1429 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 SYNJ2BP-COX16A0A087WUM0 186 aa2.03□□□□□ -2.08
CD44-233ENST00000531141 BPY2O14599 106 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms